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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TNFRSF1A, tumor necrosis factor receptor superfamily, member 1A
Sequence ID:NM_001065
RefSeqGene ID:NG_007506
Entrez Gene ID:7132
Ensembl ID:ENSG00000067182

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
MULTIPLE SCLEROSIS 
PERIODIC FEVER, FAMILIAL 

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6437939 - 6451170

NM_001065 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3489864379236438787
899118764389436439231
1188121664394326439460
1217133064397636439876
1331140464400186440091
1405148364422346442312
1484163364425326442681
1634176264429026443030
1763191664432566443409
1917225864509416451282

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4131360Full LengthBC010140tumor necrosis factor receptor superfamily, member 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001056  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001065 NP_001056 P19438 TNFR_c6
Death

Related Sequences

 
mRNAGenPeptSwissProt
M33294 AAA03210 P19438
M58286 AAA36753 P19438
M63121 AAA36754 P19438
M60275 AAA36756 P19438
BC010140 AAH10140 P19438
AY182755 AAO23979 Q6Y4Q7
EU176726 ABW03527  
EU176385 ABW03836  
EU927389 ACH57451 B5M0B5
JN172914 AEO89726 J9PH39
AK291088 BAF83777 P19438
AK315509 BAG37891 P19438
AK056611 BAG51763 P19438
AK298729 BAG60879 P19438
AK304517 BAG65321 P19438
A21522 CAA01558 P19438

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNFRSF1A NP_001056 M.musculus Tnfrsf1a 21937 Gene Info NP_035739 66
R.norvegicus Tnfrsf1a 25625   NP_037223 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database

BioCarta Pathways
Pathway information courtesy of BioCarta