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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ABCA3, ATP-binding cassette, sub-family A (ABC1), member 3
Sequence ID:NM_001089
RefSeqGene ID:NG_011790
Entrez Gene ID:21
Ensembl ID:ENSG00000167972

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 2326593 - 2376494

 Exon Info From UCSC:
NM_001089

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860312Full LengthBC151840ATP-binding cassette, sub-family A (ABC1), member 3
9021763Full LengthBC140895ATP-binding cassette, sub-family A (ABC1), member 3
9056794Full LengthBC146866ATP-binding cassette, sub-family A (ABC1), member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001080  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001089 NP_001080 Q99758 ABC_tran

Related Sequences

 
mRNAGenPeptSwissProt
U78735 AAC50967 Q99758
BC020724 AAH20724 Q6P5P9
BC062779 AAH62779 Q6P5P9
BC140895 AAI40896 Q99758
BC146866 AAI46867 Q99758
BC151840 AAI51841 A7MBM9
AB070929 BAB86781 Q99758
AB210044 BAE06126 Q4LE27
X97187 CAA65825 Q99758

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCA3 NP_001080 M.musculus Abca3 27410 Gene Info NP_038883 88
R.norvegicus Abca3 302973   XP_220219 88
A.gambiae AgaP_AGAP012156 1280527   XP_552044 40
A.gambiae AgaP_AGAP006379 1276992   XP_557048 40
A.gambiae AgaP_AGAP012155 4577893   XP_320377 40
D.melanogaster CG1718 33103   NP_608445 40
A.gambiae AgaP_AGAP006380 5666864   XP_001688862 39
A.gambiae AgaP_AGAP007504 1269722   XP_308371 39
C.elegans abt-4 178559   NP_503175 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database