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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TNFRSF1B, tumor necrosis factor receptor superfamily, member 1B
Sequence ID:NM_001066
RefSeqGene ID:NG_029791
Entrez Gene ID:7133
Ensembl ID:ENSG00000028137

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 12227142 - 12267095

NM_001066 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11671222705912227225
1682671224885212248951
2683961225101312251141
3975461225183012251979
5476401225248712252580
6418761225291912253154
8779541225401112254088
9559891225464012254674
99011941226202312262227
119536741226679612269275

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6198614Full LengthBC052977tumor necrosis factor receptor superfamily, member 1B
4111730IncompleteBC011844tumor necrosis factor receptor superfamily, member 1B
5022068IncompleteBC042167tumor necrosis factor receptor superfamily, member 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001057  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001066 NP_001057 P20333 TNFR_c6

Related Sequences

 
mRNAGenPeptSwissProt
M55994 AAA36755 P20333
M32315 AAA59929 P20333
M35857 AAA63262 P20333
S63368 AAB19824 P20333
BC011844 AAH11844 Q8IVS6
BC042167 AAH42167 Q8IVS6
BC052977 AAH52977 P20333
AY148473 AAN72434 P20333
BT019927 AAV38730 P20333
EU826615 ACF47651 B5A977

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNFRSF1B NP_001057 M.musculus Tnfrsf1b 21938 Gene Info NP_035740 64
R.norvegicus Tnfrsf1b 156767   NP_569110 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database

BioCarta Pathways
Pathway information courtesy of BioCarta