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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC38A6, Solute carrier family 38, member 6
Sequence ID:NM_001172702
NM_153811
Entrez Gene ID:145389
Ensembl ID:ENSG00000139974

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14q23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 61448154 - 61519163

 Exon Info From UCSC:
NM_001172702
NM_153811

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5737780Full LengthBC110378solute carrier family 38, member 6
5762878IncompleteBC064429solute carrier family 38, member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_722518  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172702 NP_001166173    
NM_153811 NP_722518 Q8IZM9 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC110378 AAI10379 Q8IZM9
AF543422 AAN47144 Q8IZM9
AK303839 BAG64783 B4E1H1
BX248072 CAD62361 Q8IZM9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC38A6 NP_722518 R.norvegicus Slc38a6 299139   NP_001013117 85
M.musculus Slc38a6 625098 Gene Info NP_001032806 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)