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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. BHLHE40, Basic helix-loop-helix family, member e40
Sequence ID:NM_003670
Entrez Gene ID:8553
Ensembl ID:ENSG00000134107

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p26Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 5021207 - 5026861

NM_003670 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
138750210965021482
38845750216465021715
45856550219855022092
56668950230765023199
690303250245205026862

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4860809Full LengthBC082238basic helix-loop-helix family, member e40

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003661  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003670 NP_003661 Q6IB83
O14503
HLH
Hairy_orange

Related Sequences

 
mRNAGenPeptSwissProt
BC082238 AAH82238 Q6IB83
O14503
EU446668 ABZ92197  
AB004066 BAA21720 Q6IB83
O14503
AK312509 BAG35410 Q6IB83
AK293205 BAG56745 B4DDI4
CR456921 CAG33202 Q6IB83
O14503

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BHLHE40 NP_003661 M.musculus Bhlhe40 20893 Gene Info NP_035628 91
R.norvegicus Bhlhe40 79431   NP_445780 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database