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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
9p13 t(1;9)(p13;p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 t(2;9)(p12;p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 t(6;9)(p23;p13) Follicular lymphoma    
9p13 t(6;9)(p25;p13) Follicular lymphoma    
9p13 t(7;9)(q11;p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma   PAX5/AUTS2,PAX5/ELN
9p13 t(8;9)(q24;p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 t(8;9)(q24;p13) Burkitt lymphoma/leukemia    
9p13 t(8;9)(q24;p13) Diffuse large B-cell lymphoma   MYC/ZBTB5,MYC/ZCCHC7,PVT1/ZCCHC7
9p13 t(8;9)(q24;p13) Mature B-cell neoplasm, NOS    
9p13 t(9;11)(p13;p15) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 t(9;12)(p13;q13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 t(9;12)(p13;q24) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 t(9;14)(p13;q32) Chronic lymphocytic leukemia   IGH+
9p13 t(9;14)(p13;q32) Diffuse large B-cell lymphoma   11  IGH/PAX5,IGH+
9p13 t(9;14)(p13;q32) Follicular lymphoma    
9p13 t(9;14)(p13;q32) Mature B-cell neoplasm, NOS   IGH/PAX5
9p13 t(9;14)(p13;q32) Nodal marginal zone B-cell lymphoma    
9p13 t(9;14)(p13;q32) Splenic marginal zone B-cell lymphoma   IGH/PAX5
9p13 t(9;20)(p13;q13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 t(9;9;22)(p13;q34;q11) Chronic myeloid leukemia, aberrant translocation   BCR/ABL1

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
9p13 add(9)(p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma   39   
9p13 add(9)(p13) Acute myeloblastic leukemia without maturation (FAB type M1)    
9p13 add(9)(p13) Acute myeloid leukemia, NOS    
9p13 add(9)(p13) Adenocarcinoma Lung  
9p13 add(9)(p13) Adenocarcinoma Ovary  
9p13 add(9)(p13) Adenocarcinoma Breast  
9p13 add(9)(p13) Adenocarcinoma Kidney  
9p13 add(9)(p13) Adenocarcinoma Pancreas  
9p13 add(9)(p13) Astrocytoma, grade III-IV Brain  
9p13 add(9)(p13) Burkitt lymphoma/leukemia    
9p13 add(9)(p13) Chondrosarcoma, NOS Skeleton  
9p13 add(9)(p13) Chronic myeloid leukemia, t(9;22)    
9p13 add(9)(p13) Diffuse large B-cell lymphoma    
9p13 add(9)(p13) Follicular lymphoma    
9p13 add(9)(p13) Mature B-cell neoplasm, NOS    
9p13 add(9)(p13) Multiple myeloma    
9p13 add(9)(p13) Osteosarcoma, NOS Skeleton  
9p13 add(9)(p13) Wilms tumor Kidney  
9p13 del(9)(p11p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 del(9)(p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma   79  PAX5/JAK2
9p13 del(9)(p13) Acute myeloblastic leukemia without maturation (FAB type M1)    
9p13 del(9)(p13) Acute myeloid leukemia, NOS    
9p13 del(9)(p13) Adenocarcinoma Breast  
9p13 del(9)(p13) Adenocarcinoma Ovary  
9p13 del(9)(p13) Adenocarcinoma Kidney  
9p13 del(9)(p13) Adenocarcinoma Pancreas  
9p13 del(9)(p13) Astrocytoma, grade III-IV Brain 14   
9p13 del(9)(p13) Burkitt lymphoma/leukemia    
9p13 del(9)(p13) Chondrosarcoma, NOS Skeleton  
9p13 del(9)(p13) Chronic lymphocytic leukemia    
9p13 del(9)(p13) Diffuse large B-cell lymphoma    
9p13 del(9)(p13) Follicular lymphoma   10   
9p13 del(9)(p13) Lymphoplasmacytic lymphoma    
9p13 del(9)(p13) Malignant peripheral nerve sheath tumor/Triton Soft tissue  
9p13 del(9)(p13) Mantle cell lymphoma    
9p13 del(9)(p13) Mature B-cell neoplasm, NOS    
9p13 del(9)(p13) Mesothelioma Pleura  
9p13 del(9)(p13) Multiple myeloma   10   
9p13 del(9)(p13) Myxofibrosarcoma Soft tissue  
9p13 del(9)(p13) Squamous cell carcinoma Tongue  
9p13 del(9)(p13) Squamous cell carcinoma Lung  
9p13 del(9)(p13p21) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 del(9)(p13p22) Acute lymphoblastic leukemia/lymphoblastic lymphoma   16   
9p13 del(9)(p13p23) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 del(9)(p13p23) Splenic marginal zone B-cell lymphoma    
9p13 del(9)(p13p24) Acute lymphoblastic leukemia/lymphoblastic lymphoma   PAX5/JAK2
9p13 del(9)(p13p24) Diffuse large B-cell lymphoma    
9p13 der(14)t(9;14)(p13;q32) Multiple myeloma    
9p13 der(18)t(9;18)(p13;p11) Polycythemia vera    
9p13 der(9)del(9)(p13)t(9;22)(q34;q11) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 der(9)t(7;9)(p11;p13)t(9;22)(q34;q11) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 der(9)t(7;9)(q11;p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 der(9)t(9;11)(p13;q21) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 der(9)t(9;13)(p13;q12) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 der(9)t(9;18)(p13;q11) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 der(9)t(9;21)(p13;q11) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 der(9)t(9;21)(p13;q11) Multiple myeloma    
9p13 dic(7;9)(p11;p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 dic(9;12)(p13;p11) Acute lymphoblastic leukemia/lymphoblastic lymphoma   13   
9p13 dic(9;12)(p13;p12) Acute lymphoblastic leukemia/lymphoblastic lymphoma   PAX5/SLCO1B3
9p13 dic(9;12)(p13;p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma   10  PAX5/ETV6
9p13 dic(9;17)(p13;p11) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 dic(9;18)(p13;p11) Acute lymphoblastic leukemia/lymphoblastic lymphoma    
9p13 dic(9;20)(p13;q11) Acute lymphoblastic leukemia/lymphoblastic lymphoma   50  PAX5/ASXL1,PAX5/C20ORF112,PAX5/KIF3B,ZCCHC7+
9p13 idic(9)(p13) Acute lymphoblastic leukemia/lymphoblastic lymphoma