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CCAP BAC Clones

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Chromosome X


Chromosome X
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
Xp22.32b RP11-366M24 chrX 5Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303248 SP6,
AZ303247 T7
AC078956 DXS1118E
Xp22.31d~22.31e RP11-383I22 chrX 9Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423317 T7,
CL423315 SP6,
AQ533276 SP6
  DXS1375
Xp22.2 RP11-308F2 chrX 14Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423280 SP6,
CL423284 T7
  DXS7951
Xp22.2 RP11-382D24 chrX 12Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254489 T7,
AZ254490 SP6
  DXS7730
Xp22.13d~22.13e RP11-568P9 chrX 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254682 T7,
AZ303377 SP6
  DXS7793
Xp22.12b RP11-482C1 chrX 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303227 T7,
AQ629987 T7,
AQ629984 SP6,
AZ303228 SP6
  DXS8264+
Xp22.12a~22.12b RP11-507P24 chrX 20Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ515683 SP6+,
AZ303290 T7
  DXS7786
Xp22.12a RP11-497C10 chrX 21Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254653 SP6,
AZ254652 T7
  DXS7480
Xp21.3d RP11-26L4 chrX 26Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B84600 T7,
B84599 SP6
AC022356 
Xp21.3b RP11-487M22 chrX 28Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301104 T7,
AQ631865 T7,
AZ301105 SP6
  DXS7926
Xp21.2 RP11-46A23 chrX 31Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ198399,
AQ198403
  SHGC-1505
Xp21.1e~21.2a RP11-509C1 chrX 31Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303291 T7,
AZ303292 SP6
  DXS7826
Xp21.1a RP11-495K15 chrX 37Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303207 T7,
AZ303208 SP6
  RH35775
Xp11.4e RP11-506C6 chrX 38Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303203 T7,
AZ303204 SP6
  DXS7611
Xp11.4d~11.4e RP11-429N5 chrX 39Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254511 T7,
AQ551510 T7,
AQ551497 SP6,
AZ254512 SP6
  SWXD3103
Xp11.4a RP11-299D7 chrX 40Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254436 T7+,
AZ254437 SP6+,
AQ504705 SP6
  RH38747
Xp11.3b RP11-384A17 chrX 43Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254494 SP6,
AQ533314 T7,
AZ254493 T7
  RH63518+
Xp11.3a RP11-531L8 chrX 44Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303205 T7,
AZ303206 SP6
  RH16599
Xp11.23f RP11-466C12 chrX 47Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254479 T7,
AQ635914 SP6,
AZ254480 SP6
  DXS7629
Xp11.22c~11.23a RP11-528A24 chrX 48Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301109 SP6,
AZ301108 T7
  DXS1331+
Xp11.22a RP11-22B10 chrX 51Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ009390 T7,
B92169 SP6,
B86117 SP6
AL929101 
Xp11.21a RP11-292J24 chrX 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301091 T7,
CL423347 T7,
CL423344 SP6
  DXS7159E
Xp11.1a RP11-431N15 chrX 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254513 T7,
AZ254514 SP6
AL354793 RH25723
Xq11.1b RP11-434B14 chrX 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254515 T7,
AQ552291 T7,
AQ552290 SP6,
AZ254516 SP6
  DXS7086
Xq11.1b RP11-434B14 chrY 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ552290 SP6,
AZ254516 SP6,
AZ254515 T7*,
AQ552291 T7*
  DXS7086*
Xq12a RP11-419G1 chrX 67Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254505 T7,
AZ254506 SP6
  DXS7838
Xq13.1d RP11-402P6 chrX 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254497 T7,
AZ254498 SP6
BX276092 DXS1517+
Xq13.1e RP11-436L1 chrX 71Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254646 SP6,
AZ254645 T7
  DXS1377
Xq13.2a RP11-451F6 chrX 73Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ586104 SP6+,
AZ254477 T7,
AZ254478 SP6
  DXS1103E
Xq13.3b RP11-477B2 chrX 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254486 SP6,
AQ636732 SP6,
AZ254485 T7,
AQ636735 T7
  DXS1383
Xq21.1a~21.1b RP11-297K23 chrX 78Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254434 T7+,
AZ254435 SP6+
  DXS6954
Xq21.1d RP11-54F22 chrX 83Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ082140,
AQ082142 T7
AL389887 DXS7135
Xq21.31b RP11-567N15 chrX 87Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254681 SP6,
AZ254680 T7
  DXS7695
Xq21.32a RP11-483J19 chrX 92Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303289 SP6,
AQ629407 SP6,
AQ629410 T7,
AZ303288 T7
  DXS7552
Xq21.33b~21.33c RP11-335H4 chrX 94Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254448 T7+,
AZ254449 SP6+
  DXS1398
Xq21.33c~21.33d RP11-379J18 chrX 97Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254473 T7+,
AZ254474 SP6+,
AQ533759 T7,
AQ533757 SP6
  DXS1465
Xq21.33d~22.1a RP11-508G21 chrX 99Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303375 SP6,
AZ515684 T7
  DXS7735
Xq22.1b~22.1c RP11-467H14 chrX 101Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254649 SP6,
AQ630970 SP6,
AZ254648 T7,
AQ630973 T7
  sWXD3584
Xq22.2a RP11-572H24 chrX 103Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254683 T7,
AZ254684 SP6
  DXS1460
Xq22.2b~22.3a RP11-452M1 chrX 106Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301089 SP6,
AZ254647 T7
  DXS1456
Xq22.3c RP11-513O15 chrX 110Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254657 T7,
AZ254658 SP6
  DXS7357
Xq23c RP11-528G12 chrX 114Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303229 T7,
AZ303230 SP6
  DXS8297+
Xq23d~23e RP11-491C15 chrX 116Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303300 SP6,
AZ303299 T7
  DXS7319
Xq23e~24a RP11-331F17 chrX 116Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254446 T7+,
AZ254447 SP6+
  DXS7918
Xq24c RP11-561J7 chrX 117Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254675 SP6,
AZ254674 T7
  DXS7274
Xq24e~25a RP11-423F7 chrX 119Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254507 T7,
AZ254508 SP6,
AQ549465 SP6
  stSG2986
Xq25a RP11-531P11 chrX 120Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254665 T7,
AZ254666 SP6
  DXS7316
Xq25a~25b RP11-526E6 chrX 122Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254663 T7,
AZ254664 SP6
  DXS7322
Xq25c RP11-325K14 chrX 122Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254440 T7+,
AZ254441 SP6+,
AQ536948 T7
  DXS7906
Xq25f RP11-488B15 chrX 124Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303218 SP6,
AZ303217 T7
  RH63424
Xq25h~26.1a RP11-383B16 chrX 127Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254492 SP6,
AQ550758 SP6,
AQ550761 T7,
AZ254491 T7
  DXS7359
Xq26.1a~26.1b RP11-348J1 chrX 128Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254460 T7+,
AZ254461 SP6+
  DXS7865
Xq26.2a RP11-486A7 chrX 130Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303223 T7,
AZ303224 SP6
  DXS7278,
sWXD1781+
Xq26.2a~26.2b RP11-508C21 chrX 130Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303214 SP6,
AZ303213 T7
  DXS7278,
RH63767+,
sWXD1781+
Xq26.2b RP11-513O11 chrX 132Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303293 T7,
AZ303294 SP6
  RH16248
Xq26.3b RP11-357N12 chrX 133Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254466 T7+,
AQ553839 T7,
AZ519469 SP6
  DXS7503
Xq26.3d~27.1a RP11-503I20 chrX 136Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303212 SP6,
AZ303211 T7
  DXS7291
Xq27.2a RP11-533L19 chrX 140Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303296 SP6,
AZ303295 T7
  DXS8232
Xq27.3a RP11-356G18 chrX 141Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254464 T7+,
AZ254465 SP6+,
AQ535824 T7,
AQ535823 SP6
  DXS7409
Xq27.3b~27.3c RP11-513H18 chrX 142Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303298 SP6,
AZ303297 T7
  DXS7381
Xq27.3c RP11-503O6 chrX 144Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303216 SP6,
AZ303215 T7
  DXS7386
Xq27.3c~27.3d RP11-406D14 chrX 145Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254500 SP6+,
AZ254499 T7
  sWXD1447
Xq27.3d~27.3e RP11-489K19 chrX 146Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303209 T7,
AQ633285 T7,
AQ633283 SP6,
AZ303210 SP6
  DXS7378
Xq28b~28c RP11-337E5 chrX 150Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254452 T7+,
AZ254453 SP6+
  DXS7076
Xq28f RP11-405N23 chrX 154Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301102 T7,
AZ301103 SP6
  DXS7060+

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.