Skip Navigation
National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Chromosomes
  • Tools
  • Genetic and Physical SNP Maps
  • SNP500Cancer

CCAP BAC Clones

1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y 

Chromosome 9


Chromosome 9
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
9p24.3a RP11-88P16 chr9 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ516926 T7,
AQ281633 T7,
AQ281631 SP6
  
9p24.2a RP11-31M2 chr9 4Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ045931,
AQ045928
AL133283 
9p24.1a RP11-79K3 chr9 7Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ283742 T7,
AZ519076 SP6,
AQ317572 SP6
AL157703 
9p23d RP11-19G1 chr9 9Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423039 T7,
B81956 T7,
CL423034 SP6
AL390723 
9p23c RP11-87N24 chr9 10Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ285710 T7 AL135790 SHGC-18065
9p22.3c~23a RP11-54D21 chr9 14Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ081562,
CL423065 SP6,
AQ115140
AL449443 
9p22.3a RP11-490C5 chr9 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ634942 T7,
AQ634941 SP6
AL390246 
9p22.2b RP11-163F8 chr9 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ380761 SP6,
AQ380771 T7
AL133214 AFM067XD3
9p22.1b RP11-252O2 chr9 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ478174 T7,
AQ478171 SP6
AL133281 SHGC-730
9p21.3d RP11-344A7 chr9 21Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ539553 SP6,
AQ539556 T7
AL137022 
9p21.3c RP11-346N23 chr9 22Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ531616 SP6,
AQ531618 T7
AL356116 
9p21.3b RP11-55P9 chr9 25Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ081836,
AQ081835
AL353730 SHGC-1979
9p21.2b RP11-57P14 chr9 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ195735,
AQ115591
AL133411 
9p21.1d RP11-159L16 chr9 29Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ374033 T7,
AQ374030 SP6
AL138893 
9p21.1c RP11-402B2 chr9 31Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL353728 
9p21.1a RP11-462B18 chr9 32Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ634208 T7 AL157884 
9p13.3c RP11-112J3 chr9 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ343296 T7+,
AQ313109 SP6
AL133410 SHGC-12605
9p13.2b RP11-3J10 chr9 37Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B63794 T7,
B48799 T7,
B63793 SP6
AL138752 AA427595
9q21.11b RP11-203L2 chr9 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423101 SP6,
CL423104 T7,
AQ420119 T7
AL354794 
9q21.11c RP11-16N10 chr9 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B83639 T7,
B82556 SP6
AL358113 SHGC-34170
9q21.13a RP11-8L13 chr9 73Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72401 SP6,
B72402 T7
AC016411,
AL391819
SHGC-9322
9q21.13b RP11-698K16 chr9 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423138 T7,
CL423135 SP6
AC021177 
9q21.13c RP11-235O14 chr9 76Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL133548 SHGC-37393+,
SHGC-37393
9q21.31c RP11-31D18 chr9 81Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ081493,
CL423169 SP6,
CL423170 T7,
AQ046123
AC023067 SHGC-20552
9q21.32a RP11-22C13 chr9 84Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B86137 SP6,
AQ009057 T7,
B86138 T7
AL133391 SHGC-1978
9q21.33a RP11-65C15 chr9 87Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ237176 SP6,
AQ237178 T7
AL161453 SHGC-5269
9q21.33c RP11-65B23 chr9 89Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ193954,
AQ237132 SP6
AL160279 SHGC-12637
9q22.1b RP11-350G13 chr9 90Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ516206 T7 AL158076 
9q22.2b~22.31a RP11-435D17 chr9 93Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ583780 SP6,
AQ553645 T7
AL359391 
9q22.32a RP11-2B6 chr9 95Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ283461 SP6,
B47731 T7
AC087784,
AL158152
 
9q22.32b RP11-80I15 chr9 96Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ281229 SP6,
AQ281231 T7
AL354893 
9q22.33a RP11-23B15 chr9 99Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B86408 SP6+,
AQ013713,
AQ013712
AL499604 SHGC-33415
9q22.33c RP11-30L7 chr9 101Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85216 T7+ AC073459,
AL359710
SHGC-31098
9q31.1a RP11-80H12 chr9 102Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284076 T7,
AQ284074 SP6
AL357935 
9q31.1b RP11-202A15 chr9 104Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ413702 T7+,
AQ413699 SP6
AL137021 
9q31.1d RP11-217O12 chr9 106Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423211 SP6,
CL423212 T7
AL512646 
9q31.2a RP11-131A5 chr9 109Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL137852 
9q31.2b RP11-143P10 chr9 110Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ387266 SP6,
AQ387269 T7
AL137019 
9q31.3a RP11-104M22 chr9 112Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ312968 T7,
AQ312967 SP6
AL157881 
9q31.3b RP11-4O1 chr9 113Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL138756 SHGC-2544
9q32c RP11-56P10 chr9 115Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ115341,
CL423245 T7,
CL423243 SP6,
AQ082560
AL137850 
9q33.1a RP11-67K19 chr9 118Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ238563 T7,
AQ201567
AL133284 
9q33.1c RP11-57K1 chr9 121Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ082644,
AQ115515
AL445683 
9q33.2a RP11-165P4 chr9 122Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ418356 SP6,
AQ418377 T7
AL137068 
9q33.3a RP11-474P12 chr9 126Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ635276 T7 AL451125 
9q33.3b RP11-1M19 chr9 128Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B49616 T7,
AQ312770 SP6
AL356862 
9q34.11b RP11-339B21 chr9 130Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL359091 
9q34.12a RP11-57C19 chr9 132Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ115418 AL359092 
9q34.12a~34.13a RP11-168A7 chr9 134Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ421808 T7,
AQ421807 SP6
AL161726 
9q34.2a RP11-92B21 chr9 136Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ321559 T7,
AQ321558 SP6
AL158031 
9q34.3b RP11-120E1 chr9 138Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ349066 SP6,
AQ349067 T7
AL591038 
9q34.3f RP11-424E7 chr9 140Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL591424 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.