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Cancer Genome Characterization Initiative

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CCAP BAC Clones

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Chromosome 8


Chromosome 8
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
8p23.2c RP11-11P7 chr8 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B74941 T7,
B74940 SP6
AC019274 
8p23.1a RP11-235I5 chr8 11Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ485960 T7,
AQ485959 SP6
AC090790 SHGC-33472
8p22c RP11-23H1 chr8 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ013789,
AQ013787
AC020992 
8p22b RP11-468H14 chr8 16Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ637600 SP6,
AQ637602 T7
AC079193 
8p22a RP11-89M16 chr8 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ517262 T7,
AQ283418 T7,
AQ283415 SP6
AC015807* 
8p22a RP11-89M16 chr8 129Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ283415 SP6*,
AQ283418 T7*,
AZ517262 T7*
AC015807 
8p21.3c~21.3b RP11-108E14 chr8 20Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ318454 SP6,
AQ318633 T7
AC018541 
8p21.2b RP11-219J21 chr8 25Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC009623 
8p21.2a RP11-138J2 chr8 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ384966 SP6,
AQ349046 T7
AC010856 SHGC-35790
8p21.1c RP11-662B19 chr8 28Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ496232 T7,
AQ434593 SP6
AC040975 
8p12c RP11-2I13 chr8 33Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B48555 T7,
B48554 SP6
AC015779 
8p11.21c RP11-44K6 chr8 39Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ202481,
AQ202482
AC007991 
8p11.21b RP11-125F4 chr8 41Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ344016 T7,
CL423173 T7
AC090140+,
AC024027
 
8p11.1b RP11-726G23 chr8 43Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC022616 
8q11.21a RP11-113H14 chr8 48Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ343295 T7,
AQ343293 SP6
AC021236 
8q11.21c RP11-10H3 chr8 50Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B71712 SP6,
B71713 T7
AC022568 
8q11.23a RP11-11C20 chr8 52Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B73085 T7,
B73084 SP6
AC090186,
AF233070
 
8q11.23b RP11-26P22 chr8 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B87018 T7,
B87017 SP6
AC016113 
8q11.23d RP11-767C6 chr8 55Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ467082 T7,
AQ494949 SP6
AC044836 
8q12.1a RP11-16M8 chr8 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75513 T7,
B75512 SP6
AC012349 
8q12.1b RP11-114M5 chr8 59Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ345497 SP6,
AQ345500 T7
AC009927 
8q12.1d RP11-91I20 chr8 61Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ282589 T7,
AQ282586 SP6
AC068389 SHGC-12703
8q12.3a RP11-317H6 chr8 62Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ535202 T7,
AQ535192 SP6
AC013543 
8q12.3c RP11-45K10 chr8 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ201259 AC011124 
8q13.1a RP11-707M3 chr8 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ408447 T7,
AQ438371 SP6
AC055822 
8q13.2a~13.2b RP11-343B22 chr8 68Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ538958 T7,
AQ538955 SP6
AC022861 
8q13.2c RP11-131P18 chr8 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC013746 
8q13.3c RP11-11K9 chr8 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B71897 T7,
B71896 SP6
AC016465 
8q21.11b RP11-359N14 chr8 74Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ541610 SP6 AC020670 
8q21.11d RP11-88N8 chr8 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ281550 SP6,
AZ516872 T7,
AQ281551 T7
AC087532,
AF305874
 
8q21.13a RP11-48B3 chr8 81Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ199304,
AQ199306
AC009812 
8q21.13c RP11-426C8 chr8 83Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ528870 SP6+ AC022260 
8q21.13d RP11-97P19 chr8 84Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ319565 SP6+,
AQ319566 T7
AC016879 
8q21.2b RP11-96G1 chr8 86Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ317599 T7,
AQ317596 SP6
AC023390 
8q21.3c RP11-88J8 chr8 90Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ516270 T7,
AQ280969 T7,
AQ280968 SP6
AC087270+,
AC102950+,
AC024026
 
8q21.3d RP11-27I15 chr8 93Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B87098 T7,
B89423 SP6
AC016232 SHGC-5171,
SHGC-9208
8q22.1a RP11-30J11 chr8 95Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B87826 T7,
B87825 SP6
AC020776 AA418077
8q22.1c RP11-22I13 chr8 97Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B86256 SP6,
AQ008878 T7,
B86257 T7
AC013704 
8q22.1d RP11-662P7 chr8 98Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ496302 T7,
AQ434670 SP6
AC023073 
8q22.2b RP11-10G10 chr8 101Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72815 T7,
B72814 SP6
AC013608 SHGC-12502,
SHGC-31092
8q22.3b RP11-118J17 chr8 102Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ348517 SP6,
AQ348519 T7
AC011028 
8q23.1c RP11-79F7 chr8 107Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284146 T7,
AQ284144 SP6
AC091145+,
AF303733
 
8q23.1d RP11-22P7 chr8 109Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ014311,
B84276 T7,
B84275 SP6
AC020991 
8q23.2a RP11-25D10 chr8 110Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B83177 T7,
AQ013603,
AQ013605,
AQ003398 SP6
AC023245 
8q23.3c RP11-3A12 chr8 113Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B48714 T7,
B48713 SP6
AC007719 
8q23.3e RP11-393K19 chr8 115Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC025881 
8q24.11a RP11-30P9 chr8 118Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85274 T7,
B85273 SP6
AC024329 
8q24.12b RP11-534K13 chr8 121Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC087751+,
AC020603
 
8q24.13a RP11-468O2 chr8 124Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ631716 T7 AC018992 
8q24.21a RP11-65D17 chr8 127Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ193999,
AQ237145 SP6
AC087667,
AF188028
AFM203XD10,
SHGC-1929
8q24.22b RP11-71N3 chr8 133Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ237087 T7,
AQ268633 SP6
AC123780+,
AC011200,
AC090262
 
8q24.23b RP11-489O18 chr8 139Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ633886 T7,
AQ633884 SP6
AC079015 
8q24.23c RP11-374B17 chr8 139Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC068476 
8q24.3d RP11-953B20 chr8 142Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ700743 SP6,
AQ571424 T7
AC104417 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.