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CCAP BAC Clones

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Chromosome 6


Chromosome 6
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
6p25.3a RP11-16N9 chr6 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B81763 SP6,
B82575 T7
AC012350 
6p25.2a RP11-299J5 chr6 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ504936 T7,
AQ504935 SP6
AL359852 
6p25.1c~25.2a RP11-15N12 chr6 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B76583 T7,
B76582 SP6
AL160398 
6p25.1a~25.1b RP11-556O15 chr6 6Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423079 T7,
CL423074 SP6
AL139390 
6p24.3a~24.3b RP11-12I14 chr6 9Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75830 SP6,
B75831 T7
AL139387 
6p24.3a RP11-15I14 chr6 10Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B83514 SP6,
B76472 SP6,
B83515 T7,
B76473 T7
AL138877 
6p24.1a RP11-124B11 chr6 12Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ343398 SP6,
AQ343399 T7
AL391829 
6p23b RP11-27F12 chr6 14Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423113 T7,
B87071 T7,
CL423108 SP6
AC011917,
AL109914
 
6p22.3e RP11-686D16 chr6 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423176 T7 AL357052 
6p22.3e RP11-90M17 chr6 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284392 T7,
AQ284389 SP6
  
6p22.3c RP11-33I5 chr6 22Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ046175,
CL423041 T7,
CL423038 SP6
AL360158 
6p22.1b RP11-150A6 chr6 29Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ377649 SP6,
AQ377651 T7
AL096770 
6p21.32b RP11-10A19 chr6 32Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72694 SP6,
B72695 T7
AC022567 
6p21.32a RP11-175A4 chr6 33Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ412450 SP6,
AQ412453 T7
AL161903 
6p21.31c RP11-375E1 chr6 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423071 T7,
CL423068 SP6
AL157372,
BX255972,
BX255973
 
6p21.2c RP11-52A1 chr6 36Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ056955,
AQ056948
AC011191 
6p21.2b RP11-14G23 chr6 40Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B76277 T7,
B76276 SP6
AC011679 AFMB014YF5
6p21.1h RP11-298J23 chr6 41Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BH367109 T7,
CL423184 T7,
CL423177 SP6
AL365205 
6p21.1d RP11-22I24 chr6 43Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ009376 T7,
B86273 SP6
AL353602 
6p21.1a~12.3f RP11-79F13 chr6 44Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284162 T7,
AQ284160 SP6
AC023013,
AL512379
 
6p12.3f RP11-39C2 chr6 47Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ029979 T7,
CL423045 T7,
CL423042 SP6
AL355518 AFM301WB9+,
AFM301WB9
6p12.3d RP11-23E24 chr6 48Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B88668 T7,
AQ014233
AC018651 
6p12.3b RP11-413D16 chr6 49Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ550686 T7,
AQ550683 SP6
AL356586 
6p12.1d RP11-362K18 chr6 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423073 SP6,
CL423078 T7
AL365328 
6p12.1c RP11-120K22 chr6 55Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ350429 SP6,
AQ350432 T7
AL137178 
6q11.1b RP11-448N11 chr6 63Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL355375 
6q12d RP11-13B22 chr6 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423112 T7,
CL423107 SP6,
B75997 SP6
AL450319 
6q12f RP11-301G19 chr6 68Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL713998 
6q12g~13a RP11-29F4 chr6 71Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85005 T7,
B85004 SP6
AC024971 
6q13c RP11-592J5 chr6 74Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ335719 T7+,
AQ335804 SP6
AC068247 
6q14.1a RP11-343P23 chr6 77Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL355612 
6q14.1b RP11-217L13 chr6 79Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423143 SP6,
CL423146 T7
AC027616 AFM191XA3+,
AFM191XA3
6q14.1d RP11-25P5 chr6 81Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ013491,
B82157 T7
AC016012 
6q14.1e RP11-536I19 chr6 83Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423175 T7 AL139333 
6q14.3a RP11-18O9 chr6 86Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85521 SP6,
B85522 T7
AC021687 
6q14.3b RP11-43O2 chr6 87Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ199712 AL390125 stbA15J23T7
6q15c RP11-12B13 chr6 89Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301780 T7+,
B75711 SP6
AL139090 
6q15d RP11-63K6 chr6 90Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ203078,
CL423036 SP6,
CL423037 T7,
AQ203080
AL353692 
6q16.1a~16.1b RP11-538A16 chr6 93Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL356956 
6q16.1d~16.1e RP11-386J20 chr6 96Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423067 SP6,
CL423070 T7
AL356303 
6q16.1e RP11-22L21 chr6 97Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B86323 SP6,
AQ009070 T7,
B86324 T7
AL159985 
6q16.3a RP11-142E21 chr6 101Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ389028 T7,
AQ389027 SP6
AL356434 
6q16.3d RP11-327K21 chr6 103Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL357506 
6q21a RP11-404H14 chr6 106Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423103 SP6,
CL423106 T7
AL356859 
6q21d RP11-249L21 chr6 109Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ485474 SP6,
CL423137 SP6,
CL423140 T7
AL445189 
6q21h RP11-237B9 chr6 111Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ481465 T7,
AQ481463 SP6
AC040894 
6q21j~22.1a RP11-506B6 chr6 112Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL365214 
6q22.1b RP11-390H10 chr6 114Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423077 T7,
CL423072 SP6
AL356425 
6q22.1c RP11-510G24 chr6 115Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423111 T7 AL449303 stdJ230G15SP6
6q22.31a RP11-61K10 chr6 118Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ194253,
CL423145 T7,
CL423142 SP6,
AQ194250
AL355479,
AL449196
 
6q22.31e RP11-332F24 chr6 126Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423174 T7,
CL423171 SP6
AL389919 stHey2seq+
6q22.33a RP11-325O24 chr6 128Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ537046 T7,
AQ537040 SP6
AL356432 
6q22.33c RP11-593A16 chr6 130Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ337490 T7,
AQ337646 SP6
AL356579 
6q23.2a RP11-456H15 chr6 131Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423035 SP6,
CL423040 T7,
AQ584535 T7
AL353776 
6q23.2b RP11-435E4 chr6 132Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ585671 SP6,
AQ553522 T7
AL357505 
6q23.3c RP11-133O15 chr6 138Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ521467 SP6,
AQ384440 T7
AC036236 
6q24.1a RP11-15H7 chr6 139Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75337 T7,
B75336 SP6
AL390205 AFM254XH1+,
AFM254XH1
6q24.1b RP11-30G19 chr6 141Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B87783 T7,
B87782 SP6
AL591515+ 
6q24.1d~24.2a RP11-484K19 chr6 143Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423069 T7,
CL423066 SP6
AL355307 
6q24.2c~24.3a RP11-43G16 chr6 145Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423105 T7,
CL423102 SP6,
AQ199386
AL357376 
6q24.3b RP11-715G15 chr6 146Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ513028 SP6,
AQ517664 T7
AL359547 
6q25.1b RP11-291C6 chr6 150Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423136 SP6,
CL423139 T7
AL451061 stbA136K14SP6
6q25.1c~25.2a RP11-108N8 chr6 151Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ319280 T7,
AQ349563 SP6
AL590543 
6q25.2b RP11-535A9 chr6 153Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423188 SP6,
CL423355 T7
AL356963 
6q25.2c RP11-455I14 chr6 155Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ587199 T7 AL355343 
6q25.3b RP11-193H22 chr6 157Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423033 T7 AL450328 D6S1007
6q25.3d RP11-13P5 chr6 159Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75190 SP6,
B75191 T7
AL356417 
6q26b RP11-307K1 chr6 162Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC027441,
AL391833
 
6q27d RP11-37D8 chr6 168Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423144 T7,
CL423141 SP6
AL442124 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.