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CCAP BAC Clones

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Chromosome 4


Chromosome 4
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
4p16.3c RP11-460I19 chr4 0Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ633399 SP6,
AQ633400 T7
AC019103 
4p16.3b RP11-478A6 chr4 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ634157 T7 AL359379 
4p16.3a RP11-808B21 chr4 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423116 SP6,
CL423121 T7
AC055889,
AC084195
 
4p16.2c RP11-732L22 chr4 4Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ454147 T7 AC041016 
4p16.2b RP11-326O23 chr4 5Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC096740 
4p16.1c RP11-117J13 chr4 8Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ349578 SP6,
AQ349580 T7
AC104650 N59764
4p15.33c RP11-1J7 chr4 11Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ315830 SP6+,
B47699 T7
AC097452 
4p15.32d RP11-206O9 chr4 16Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ421544 T7,
AQ421543 SP6
AC060791 
4p15.31e RP11-683L20 chr4 18Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ612680 T7+,
AQ465461 SP6
AC018967 
4p15.31d RP11-10P19 chr4 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B73045 T7,
B73044 SP6
AC096718 
4p15.2c RP11-660M5 chr4 24Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ434132 SP6+,
AQ434066 T7
AC104662 
4p15.1e RP11-261K4 chr4 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ483548 SP6,
AQ483549 T7
AC093791 
4p15.1d RP11-478O20 chr4 31Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ635073 T7,
AQ635070 SP6
AC041018 
4p15.1b RP11-484N11 chr4 33Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ631325 T7,
AQ631322 SP6
AC019216 
4p15.1a RP11-24L21 chr4 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B86707 T7,
B88765 SP6,
B86706 SP6
AC116172 
4p14e RP11-9D8 chr4 37Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423046 T7,
B71537 T7
AC108022 
4p14d RP11-472B18 chr4 39Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423080 T7,
CL423075 SP6,
AQ630198 SP6
AC021148 
4p14a RP11-1I10 chr4 40Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B48382 T7,
AQ315627 SP6
AC096712 
4p13c RP11-166B20 chr4 43Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ380940 T7,
AQ419829 SP6
AC080132 
4p13b RP11-178N2 chr4 45Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ414280 T7+ AC096737 
4p12b RP11-121C2 chr4 47Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ343574 T7,
AQ343571 SP6
AC013491,
AC107068
SHGC4-1079
4q12b RP11-89B16 chr4 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ285705 SP6+,
AQ285707 T7
AC105384 
4q12e RP11-345F18 chr4 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC110611 
4q12f RP11-319E12 chr4 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ536895 T7,
AQ536894 SP6
AC013724 
4q13.1c RP11-24I7 chr4 62Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ013400,
B84441 T7,
AQ013402,
B89377 SP6
AC096723 
4q13.1e RP11-21I19 chr4 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ008855 SP6,
B85949 SP6,
B85950 T7
AC079213 
4q13.1f~13.2a RP11-19C24 chr4 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85530 T7,
B85529 SP6
AC096721 
4q13.2c RP11-642E20 chr4 68Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ402614 T7,
AQ402910 SP6
AC098799 
4q13.3b RP11-529K3 chr4 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC063956 
4q13.3c RP11-373J21 chr4 73Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423109 SP6,
CL423114 T7
AC095056 
4q13.3d RP11-88J6 chr4 74Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ280966 T7,
AQ280964 SP6
AC108029,
AL133124
 
4q21.21a RP11-5K24 chr4 79Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B49271 T7,
B49270 SP6
AC131945,
AL160235
 
4q21.21b RP11-162K6 chr4 81Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ374755 SP6+,
AQ374759 T7
AC097711 
4q21.21c RP11-110P12 chr4 82Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ320997 SP6,
AQ320999 T7
AC015949 
4q21.22a RP11-429O22 chr4 84Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC073840 
4q21.23a RP11-678H22 chr4 85Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ518358 SP6,
AQ408684 T7
AC096766 
4q21.23b RP11-23B19 chr4 87Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ013716,
AQ013717
AC016295 T75436
4q21.3b RP11-397E7 chr4 87Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC093827 
4q22.1b RP11-115D19 chr4 90Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ346324 SP6,
AQ346327 T7
AC097478 
4q22.1c RP11-484F3 chr4 93Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ631162 T7 AC093847 
4q22.3b RP11-369I16 chr4 98Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ529700 SP6,
AQ529703 T7
AC018884 
4q23b RP11-414I7 chr4 100Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ552934 SP6,
AQ552938 T7
AC108061 
4q23c~24a RP11-110C16 chr4 103Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ350114 SP6,
AQ323531 T7
AC023853 SHGC-20211
4q24c RP11-26E14 chr4 104Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ003337 SP6,
B86840 SP6,
AQ003339 T7
AC109346 
4q24e RP11-752J12 chr4 107Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423178 T7,
CL423172 SP6,
AQ499487 SP6
AC069206 
4q25a RP11-66J6 chr4 109Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ238235 T7,
AQ238232 SP6
AC026988 
4q25b RP11-144H4 chr4 110Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ371617 SP6,
AQ371620 T7
AC027472 
4q25c RP11-380D23 chr4 111Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC017068 RH17615
4q25f RP11-73K9 chr4 113Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ268132 SP6,
AQ268133 T7
AC069028,
AC109347
 
4q26a RP11-362M19 chr4 115Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC093815 
4q26d RP11-778G8 chr4 118Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ756250 T7 AC024353 
4q26f~27a RP11-21I10 chr4 120Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85936 T7,
B83122 SP6
AC107048 
4q27b RP11-647P12 chr4 122Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ440296 T7 AC105254 
4q28.1a RP11-636M7 chr4 124Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ433553 SP6,
AQ402414 T7
AC109357 
4q28.1b RP11-728C8 chr4 125Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ450937 T7,
AQ513846 SP6
AC108075 
4q28.1c RP11-15O17 chr4 126Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B83579 T7 AC079835 SHGC4-177
4q28.1d RP11-77P11 chr4 127Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284562 SP6,
AQ284563 T7
AC079067,
AC114742
 
4q28.2b RP11-184M15 chr4 129Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ420457 T7,
AQ420454 SP6
AC078850 
4q28.2c~28.3a RP11-72C15 chr4 131Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ266983 T7,
AQ285025 SP6
AC096731 
4q28.3b RP11-149A7 chr4 133Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ376424 T7 AC098858 SHGC4-178
4q28.3c RP11-45L5 chr4 135Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ195593,
AQ195597
AC015631 
4q28.3g RP11-60A1 chr4 137Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ200822,
AQ200092
AC006572 
4q28.3i~31.1a RP11-733C7 chr4 139Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ456692 T7+ AC093903 
4q31.21b RP11-5K16 chr4 141Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B49262 T7,
B49261 SP6
AC108019 SHGC4-749
4q31.21c RP11-739G21 chr4 143Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ494833 T7+,
AQ462441 SP6
AC108077 
4q31.23a RP11-56F3 chr4 148Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ115821,
CL423314 T7,
CL423313 SP6,
AQ081466
AC083898 
4q31.23c RP11-24I21 chr4 150Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ013411,
B86667 T7,
AQ013418,
AQ003296 SP6
AC097465 
4q31.3a RP11-2J13 chr4 152Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B63640 T7,
B48573 T7,
B63639 SP6
AC097455 
4q31.3b RP11-73G16 chr4 153Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ268920 SP6,
AQ285968 T7
AC097375 SHGC4-597
4q32.1c RP11-17C4 chr4 158Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B81784 T7,
B81783 SP6
AC105312 
4q32.1d RP11-114P18 chr4 160Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ343226 T7,
AQ343220 SP6
AC021101 
4q32.3a RP11-808H17 chr4 165Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC079240 
4q32.3d RP11-70M19 chr4 168Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ239270 T7,
AQ239267 SP6
AC079086,
AC107210
 
4q32.3e RP11-36G9 chr4 170Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ045340,
AQ045338
AC079332,
AC104783
 
4q34.1a RP11-119J20 chr4 173Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ341769 SP6,
AQ341770 T7
AC024706 AFM070YA9,
SHGC-1067
4q34.1d RP11-134F18 chr4 175Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ389039 T7,
AQ389038 SP6
AC131948 
4q34.3b RP11-313E19 chr4 177Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ505339 T7,
AQ505337 SP6
AC021871+,
AC093801
 
4q35.1b~35.1c RP11-451F20 chr4 184Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ586125 T7,
AQ586123 SP6
AC093844 
4q35.1f~35.2a RP11-173M11 chr4 187Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423152 T7+ AC110771 SHGC-9749,
SHGC4-1037

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.