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CCAP BAC Clones

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Chromosome 21


Chromosome 21
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
21q11.2d RP11-31B6 chr21 14Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423281 SP6,
AQ046029,
CL423285 T7
  AFM289YH9,
SHGC-34996
21q21.1b RP11-61A21 chr21 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423316 SP6,
AQ237427 SP6,
CL423318 T7,
AQ199973
  AFMB356WG1
21q21.1c RP11-375O2 chr21 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ551247 SP6,
AQ533455 T7
  
21q21.1d RP11-92A14 chr21 18Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ320518 SP6,
AQ320519 T7
  
21q21.1e RP11-49B5 chr21 20Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ052036,
AQ052035
AF238375 
21q21.1f RP11-49J9 chr21 20Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ053102,
CL423348 T7,
AQ053086,
CL423345 SP6
  AFM268XG1+
21q21.1g RP11-97F14 chr21 22Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ320653 SP6,
AQ320655 T7
  
21q21.2a RP11-88D18 chr21 25Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ286654 T7,
AQ286652 SP6
  
21q21.3b RP11-30C13 chr21 28Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B87697 T7,
B87696 SP6
  
21q21.3c RP11-89H5 chr21 28Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284700 T7,
AQ284699 SP6
  
21q22.11a RP11-267O12 chr21 31Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423216 T7,
CL423214 SP6
  AFM317TC9,
SHGC-6873
21q22.11b RP11-79D9 chr21 33Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284082 T7,
AQ284080 SP6
  
21q22.11c RP11-8P19 chr21 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72466 SP6,
B72467 T7
  AFMA086YF9
21q22.12a RP11-17O20 chr21 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B82827 SP6,
B83690 T7
  AFMA099WC9
21q22.13a RP11-12N9 chr21 36Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423247 SP6,
CL423249 T7
  AFM261ZG1+,
AFM261ZG1
21q22.13b RP11-78B20 chr21 38Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423189 T7,
CL423350 SP6
  AFM016XE5+,
AFM016XE5
21q22.2a RP11-66C14 chr21 38Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423217 SP6,
CL423222 T7
  AFM283XH9+,
AFM283XH9
21q22.2c RP11-114H1 chr21 41Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ347382 SP6,
AQ383555 T7
  AFMA137YF5
21q22.3a RP11-120C17 chr21 41Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ349061 T7,
AQ342490 SP6
  AFMA152WD1
21q22.3b RP11-190A24 chr21 44Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423253 T7,
CL423250 SP6
  AFM326TF1+,
AFM326TF1
21q22.3d RP11-280L8 chr21 45Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ505125 T7,
AQ505123 SP6
  
21q22.3e RP11-640F21 chr21 46Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ496007 SP6,
AQ411047 T7
  

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.