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CCAP BAC Clones

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Chromosome 20


Chromosome 20
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
20p13f RP11-147L21 chr20 0Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ373834 SP6+,
CL423326 T7,
CL423321 SP6
AC040953 AFM077XD3+,
AFM077XD3,
T98414
20p13e RP11-314N13 chr20 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ503754 T7,
AQ503753 SP6
AL136531 
20p13b RP11-737G10 chr20 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ455994 T7,
AQ450629 SP6
AC023420 
20p13a RP11-48M7 chr20 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ198009,
CL423352 T7,
CL423351 SP6,
AQ198007
  AFM234TF10
20p12.3c RP11-235C20 chr20 5Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423224 T7,
CL423219 SP6
  AFMB352XD9
20p12.3a RP11-19D2 chr20 7Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B92163 SP6,
B81947 T7
AL080248 
20p12.2b RP11-24K4 chr20 9Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ014010,
B84457 SP6,
B88778 T7
  AFMA086WE9
20p12.2a RP11-90E23 chr20 11Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ281557 SP6,
AQ281560 T7
  AFM292XB5
20p12.1d RP11-157E14 chr20 12Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ372757 SP6,
AQ372761 T7
AL133331 
20p12.1c RP11-54N6 chr20 14Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ082802,
CL423252 SP6,
CL423255 T7,
AQ082803
AL355133 
20p12.1b RP11-51O4 chr20 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423282 SP6,
AQ053674,
CL423286 T7,
AQ053676
  AFM044XB4+,
AFM044XB4+,
AFM044XB4,
AFM291WE5
20p12.1a RP11-11M17 chr20 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B73188 SP6,
B73189 T7
AC013628 AFM242YF8+,
AFM242YF8
20p11.23b RP11-97N19 chr20 18Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ319526 T7,
AQ319525 SP6
AL136090 
20p11.23a~11.22b RP11-470C13 chr20 20Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ694839 T7,
CL423319 T7
AL161658 RH12147
20p11.21c RP11-500O11 chr20 22Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL133464 
20p11.21b RP11-58B10 chr20 24Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ201224,
CL423349 T7,
CL423346 SP6,
AQ201222
  AFMA191XC1
20q11.21a RP11-1147I19 chr20 29Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ698668 SP6,
AQ708250 T7
AL359765 
20q11.21c RP11-94H15 chr20 31Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ282137 SP6,
AQ315878 T7
AC023015 
20q11.22a RP11-318N1 chr20 32Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ536609 SP6,
AQ536610 T7
  stdJ791H18T7
20q11.22b RP11-381P2 chr20 33Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ532467 SP6+,
CL423292 T7,
CL423287 SP6
AL356422 
20q11.23b RP11-382A12 chr20 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ547630 SP6*,
AQ547632 T7*
AL365505 
20q11.23b RP11-382A12 chr1 245Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ547632 T7,
AQ547630 SP6
AL365505* 
20q11.23c RP11-122O1 chr20 36Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ342907 SP6,
AQ342910 T7
AL133519 
20q12 RP11-17F3 chr20 40Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85443 T7,
AZ515860 SP6
  AFM163YH8+,
AFM163YH8
20q12b RP11-9M24 chr20 38Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423325 T7+,
CL423320 SP6
  AFM142XH4+,
AFM142XH4
20q13.11a RP11-151A11 chr20 41Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ376230 SP6,
AQ376253 T7
AL359695 AFMC013YH9
20q13.12a RP11-30F23 chr20 42Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B87770 SP6,
B87771 T7
  AFMA060WG1
20q13.12c~13.13c RP11-314A4 chr20 45Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ506983 T7,
AQ506981 SP6
AL359434 
20q13.13d~13.13e RP11-5P14 chr20 48Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B69678 T7,
B49327 T7,
AZ517073 SP6
  AFM205TC9
20q13.2a RP11-10D18 chr20 49Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ520201 T7,
B72760 SP6
  AFMA192WB1
20q13.2c RP11-1F20 chr20 52Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B63548 T7,
AQ280999 SP6
AC015742 
20q13.2d RP11-172C21 chr20 53Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423191 T7,
CL423190 SP6
  AFMA114YA5,
AFMA225WE9
20q13.31a RP11-46O3 chr20 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ199652,
CL423218 SP6,
CL423223 T7,
AQ199655
AL161657 
20q13.32a RP11-344C10 chr20 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ540379 SP6,
AQ540381 T7
  stdJ646G2SP6
20q13.32b RP11-164D18 chr20 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ380608 SP6,
AQ380612 T7
AL389889 
20q13.33a RP11-723K16 chr20 59Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423251 SP6,
CL423254 T7,
AQ437220 T7
AL365229 
20q13.33d RP11-305P22 chr20 61Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL121673 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.