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Cancer Genome Characterization Initiative

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CCAP BAC Clones

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Chromosome 19


Chromosome 19
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
19p13.3e RP11-268O21 chr19 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ490667 SP6,
AQ490670 T7
AC024721 
19p13.3a RP11-565J3 chr19 5Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423256 T7 AC021165 
19p13.2d RP11-1137G4 chr19 6Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ733707 T7+ AC025278 
19p13.2a RP11-197O4 chr19 10Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423283 SP6,
CL423288 T7
AC024182 
19p13.12c CTD-3252C9 chr19 13Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC020916 
19p13.12a RP11-737I1 chr19 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC068845 
19p13.11e RP11-413M18 chr19 16Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423226 SP6,
CL423232 T7
AC021138 
19p13.11d CTD-3149D2 chr19 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ805530 SP6+ AC008761 
19p12b~12c RP11-678G14 chr19 21Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC123912 
19p12b RP11-157B13 chr19 22Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ373544 T7,
AQ373542 SP6
AC020700,
AC073539
SHGC-34357+
19p12a CTB-28I9 chr19 23Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC011493 
19q12b RP11-17N20 chr19 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B82808 T7+,
B82807 SP6
AC011883 
19q12c RP11-14D17 chr19 36Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B82262 SP6,
B87955 T7
AC011590 
19q13.11b RP11-31D10 chr19 39Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ046108,
AQ081490
AC018791 
19q13.12b RP11-44B13 chr19 42Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ203056,
AQ203055
AC009194 
19q13.12c RP11-9B17 chr19 42Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72490 SP6+,
B72491 T7
AC007676 
19q13.31a RP11-46C6 chr19 48Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ199858,
CL423261 T7,
CL423257 SP6,
AQ199854
AC068785 AA425139
19q13.31b RP11-21J15 chr19 49Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85964 SP6,
B85965 T7
AC013814 AFM329WH1
19q13.32b RP11-43N16 chr19 52Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC073548,
AC087454
AFMA133ZH9
19q13.33b RP11-50I11 chr19 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ115178,
CL423293 T7,
CL423289 SP6,
AQ053110
AC068786 AA489700
19q13.41a RP11-795B6 chr19 55Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ467977 T7+,
AQ492749 SP6+
AC027602 
19q13.41b RP11-44L20 chr19 58Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ203126,
AQ203125
AC015589 
19q13.42c~13.43b RP11-45K21 chr19 61Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ200180,
AQ200181
AC012107 
19q13.43b~13.43c RP11-420P11 chr19 63Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ550064 T7 AC009763 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.