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CCAP BAC Clones

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Chromosome 18


Chromosome 18
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
18p11.32c RP11-88C10 chr18 0Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CG734315 T7,
BZ749196 SP6,
CG734314 SP6
  14236+,
45002+,
AFM016YC5+,
AFM016YC5+,
AFM178XC3+,
AFM178XC3
18p11.32a~11.32b RP11-78H1 chr18 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ286480 T7,
AQ286478 SP6
  AFM299YF1+,
AFM299YF1
18p11.32a RP11-55N14 chr18 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ082341,
AQ115890
AC015958 AFMA175YE9
18p11.31e~11.32a RP11-106J7 chr18 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749026 T7+,
AQ317978 T7,
AQ317975 SP6,
BZ749025 SP6
AC015945 AFM205TD6,
D18S63
18p11.31e RP11-106O1 chr18 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CG734316 SP6,
CG734317 T7
  AFM080XD7+,
AFM080XD7
18p11.31d RP11-113J12 chr18 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ343331 SP6,
AQ343333 T7
  AFM238YD8+,
AFM238YD8
18p11.31d~11.31c RP11-102E12 chr18 4Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ312325 SP6,
AQ312328 T7
  AFMB329WD5
18p11.31c RP11-105C15 chr18 5Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ316136 SP6,
AQ316138 T7
  AFM283XG9
18p11.22c RP11-102O20 chr18 9Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ313383 T7,
AQ313380 SP6
  AFM259VH9+,
AFM259VH9
18p11.22b~11.22c RP11-67I20 chr18 9Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749177 T7,
AQ239191 T7,
CG734255 T7,
CG734254 SP6
  AFMA054YG9
18p11.22b RP11-24G5 chr18 10Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B84417 SP6,
AQ013368,
B84418 T7
  AFMA053WD1
18p11.22a RP11-7E5 chr18 10Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749185 T7,
BZ749184 SP6
AC016067+ D18S1158
18p11.21e RP11-151D11 chr18 13Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ378182 SP6,
BZ749045 SP6,
BZ749046 T7
  AFM266WA5+,
AFM266WA5
18p11.21b RP11-16A21 chr18 12Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749051 SP6,
BZ749052 T7
  AFM254YD5+,
AFM254YD5
18p11.21a RP11-96I11 chr18 12Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ317713 SP6+,
BZ749202 SP6,
BZ749203 T7
  AFM214XD2
18q11.2c RP11-10G8 chr18 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B71705 SP6,
B71706 T7
  AFMA052YG1
18q11.2d RP11-59E12 chr18 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749165 T7,
AQ198120,
BZ749164 SP6,
AQ198117
  AFM164ZC1
18q12.1b RP11-111H24 chr18 23Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ319809 SP6,
AQ342030 T7
  AFMA054TD1
18q12.1e RP11-19F14 chr18 28Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B82984 T7,
CG734319 T7,
CG734318 SP6,
BZ749080 SP6
  AFM238VB6+,
AFM238VB6
18q12.1g RP11-63N12 chr18 30Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ238540 T7,
AQ238539 SP6
  AFMC006XF1
18q12.2b~12.2c RP11-90B5 chr18 32Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ283417 SP6,
AZ517972 T7,
AQ283420 T7
  AFMA099ZD1
18q12.2d RP11-104N11 chr18 33Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ314013 T7,
AQ314010 SP6
  AFM298WF9+,
AFM298WF9
18q12.3b RP11-265I6 chr18 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ491099 T7,
AQ491097 SP6
  AFMA074YD9
18q21.1a~21.1b RP11-19L3 chr18 42Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749082 T7,
BZ749081 SP6
  AFM256VD5+,
AFM256VD5
18q21.1d~21.1e RP11-20H17 chr18 44Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B88779 SP6,
B85661 T7
  AFMB043WG1
18q21.1g RP11-43K24 chr18 45Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ199571,
BZ749134 T7,
BZ749133 SP6,
AQ199570
  AFM046XF6+,
AFM292WG1
18q21.2d RP11-160B24 chr18 51Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ377611 T7,
CG734321 T7,
CG734320 SP6
  AFM248YF1+,
AFM248YF1
18q21.31a~21.31b RP11-153B11 chr18 52Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ387999 SP6,
AQ388001 T7
  AFMA054YG5
18q21.31~21.32 RP11-4G8 chr18 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B48040 SP6,
CG734256 T7,
BZ749144 T7
  AFMB317ZC1
18q21.32a RP11-12J12 chr18 55Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75846 SP6,
BZ749032 SP6,
BZ749033 T7
  AFMA337WC9
18q21.32b~21.32c RP11-40D15 chr18 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CG734258 T7,
BZ749130 T7,
CG734257 SP6
  AFMB330ZC5
18q21.32c~21.33a RP11-15C15 chr18 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749047 SP6,
BZ749048 T7,
B76365 T7
  AFMA052VA9
18q21.33b RP11-75O12 chr18 59Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ268212 T7,
AQ268209 SP6
  AFM248YB9+,
AFM248YB9
18q22.1b~22.1c RP11-3K7 chr18 61Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B47942 T7,
B47941 SP6
AC010782+ AFM324WC9+,
AFM324WC9
18q22.1e~22.1f RP11-105L16 chr18 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ319765 SP6,
AQ319768 T7
  AFM094YE5
18q22.2 RP11-49H23 chr18 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ053059,
BZ749141 T7,
BZ749140 SP6,
AQ060575
  AFMB326XG9
18q22.3a~22.3b RP11-57F7 chr18 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ115997,
BZ749158 SP6,
BZ749159 T7,
AQ115996
  AFMB304YB9
18q22.3c~22.3d RP11-53N15 chr18 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ051927+,
BZ749153 T7,
BZ749152 SP6
  AFM164XE3+,
AFM164XE3
18q23b RP11-61A18 chr18 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ200841,
BZ749171 T7,
BZ749170 SP6,
AQ200845
  AFMA037ZC9
18q23b~23c RP11-4B17 chr18 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B48936 T7+,
B48935 SP6
  AFM029XC9
18q23c RP11-130J1 chr18 73Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749038 SP6,
BZ749039 T7
  AFMB015XF5
18q23c~23d RP11-7H17 chr18 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72057 SP6,
AZ520043 T7
  AFMA131WH5
18q23d RP11-87C15 chr18 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information BZ749195 T7,
BZ749194 SP6
  AFM254VD5+,
AFM254VD5

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.