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CCAP BAC Clones

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Chromosome 17


Chromosome 17
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
17p13.3g RP11-294J5 chr17 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423322 SP6,
CL423327 T7
  RH47135
17p13.3d RP11-357O7 chr17 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254624 T7,
AZ254625 SP6
  RH54972
17p13.3a RP11-380H7 chr17 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301131 T7,
AQ551627 T7,
AZ254638 SP6
AC021705 RH47913
17p13.2b~13.2c RP11-545O6 chr17 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254609 T7,
AZ254610 SP6
  RH16861
17p13.2b RP11-459C13 chr17 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301156 SP6,
AQ585429 T7,
AZ301155 T7
AC067815 RH55224
17p13.2a RP11-457I18 chr17 5Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254627 SP6,
AZ254626 T7
  RH39319
17p13.1a RP11-383G9 chr17 8Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301120 SP6,
AZ301119 T7
  RH12513
17p12c RP11-385G5 chr17 11Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301130 SP6,
AZ301129 T7
  RH48639
17p12a RP11-459E6 chr17 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301158 SP6,
AZ301157 T7
  RH76173
17p11.2i RP11-404D6 chr17 16Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301145 T7,
AZ301146 SP6
  RH9987
17p11.2g~11.2h RP11-525O11 chr17 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301335 T7,
AZ301336 SP6
  RH17427+
17p11.2c RP11-363P3 chr17 20Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301137 SP6,
AZ301136 T7
  RH65707
17p11.2a RP11-405P10 chr17 20Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301147 T7,
AZ301148 SP6
  RH39433
17q11.2c RP11-525H19 chr17 26Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254602 SP6,
AZ254601 T7
  RH55050
17q11.2d RP11-398A1 chr17 26Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254639 SP6,
AZ301142 T7
  RH28512
17q11.2e RP11-451O17 chr17 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301154 SP6,
CL423353 SP6
  RH47827
17q12b RP11-294G4 chr17 30Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301338 SP6,
AQ508306 T7,
AZ301337 T7
  RH55169
17q21.2a~21.2b RP11-513C18 chr17 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301169 SP6,
AZ301168 T7
  RH54983
17q21.31c RP11-436J4 chr17 39Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301153 SP6,
AZ301152 T7
  RH76314
17q21.32a RP11-510P20 chr17 42Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301167 SP6,
AZ301166 T7
  RH70724
17q21.32c RP11-423H11 chr17 43Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ549495 SP6+,
AQ549498 T7+,
AZ254636 T7,
AZ254637 SP6
  RH17497
17q21.33c RP11-379D19 chr17 46Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301124 SP6,
AQ531881 SP6,
AQ531884 T7,
AZ301123 T7
  RH24999
17q21.33c RP11-379D19 chrY 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ531884 T7,
AZ301123 T7,
AZ301124 SP6*,
AQ531881 SP6*
  RH24999*
17q22d RP11-481M4 chr17 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254622 SP6,
AQ628678 SP6,
AZ301163 T7
  RH55198
17q22d~23.1a RP11-142B17 chr17 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ385987 SP6,
AQ385990 T7
AC021455 R37145
17q23.2c RP11-561K8 chr17 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254615 T7,
AZ254616 SP6
  RH10683+
17q24.1a RP11-489G5 chr17 60Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ633219 T7+,
AZ254631 SP6,
AZ254630 T7
  RH18264
17q24.2b RP11-304I14 chr17 63Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC023123,
AC087389
RH12010
17q24.2c RP11-387O17 chr17 63Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301140 T7,
AZ301141 SP6
  RH16794
17q24.3a RP11-293K20 chr17 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ403256 SP6,
AZ301118 T7
AC005495 RH39341
17q24.3b RP11-300G13 chr17 65Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301125 T7,
AZ301126 SP6
  RH46249
17q24.3c RP11-387C17 chr17 68Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301138 T7,
AZ301139 SP6
AC021467+ RH69804
17q25.1a RP11-319A23 chr17 68Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254632 T7,
CL423225 T7,
CL423220 SP6
  RH26980
17q25.1b~25.1c RP11-399J11 chr17 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ301143 T7,
AZ301144 SP6
AC068874 RH10760
17q25.1d RP11-526M7 chr17 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254604 SP6,
AZ254603 T7
  RH68144
17q25.3a RP11-537M14 chr17 74Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254607 T7,
AZ254608 SP6
  RH45138
17q25.3c~25.3d RP11-467J3 chr17 74Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254628 T7,
AZ254629 SP6
  RH45324+,
RH47506+

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.