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CCAP BAC Clones

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Chromosome 16


Chromosome 16
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
16p13.3e~13.3f RP11-334D3 chr16 0Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AF188070+,
AF188098+,
CL423354 SP6,
CL423192 T7
  A004H36
16p13.3c~13.3d RP11-417B20 chr16 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AF188069+,
CL423221 SP6,
AF188089
  RH11799,
stSG429
16p13.3a~13.3b RP11-292B10 chr16 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081865 T7,
CL423335 T7,
CL423330 SP6
  A002F42+,
RH54578+
16p13.3a RP11-397B22 chr16 2Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081876 SP6+,
AZ081866 T7
  stSG30332
16p13.2c RP11-315L9 chr16 6Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081881 SP6+,
AZ081882 T7+,
AF203718 SP6+,
AF182644 T7,
AQ539205 T7
  SHGC-60581
16p13.2b RP11-291J20 chr16 8Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ303374 SP6,
AZ081878 T7
  A005C19
16p13.2a~13.2b RP11-297M9 chr16 9Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AF188084,
AF188073
AC007218 RH10972
16p13.13d RP11-498H3 chr16 10Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081991 SP6,
AZ081990 T7
  RH54690
16p13.12b RP11-474I24 chr16 12Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081889 SP6+,
AZ081931 T7+,
AF203710,
AQ634193 SP6
  RH66309
16p13.11 RP11-516F7 chr16 16Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AF188081+,
AF188095+,
CL423193 SP6,
CL423198 T7
AC137502 D16S2586E
16p12.3b RP11-306F17 chr16 18Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081970 SP6,
AZ081981 T7
  A006E38+,
A006E38,
RH67018+
16p12.3a RP11-444F15 chr16 21Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081967 T7+,
AZ081968 SP6+
  RH10885
16p12.1b~12.1c RP11-450G5 chr16 24Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AF203707+,
AZ081875 T7,
CL423233 T7,
AQ586516 T7,
CL423227 SP6
  RH10070
16p12.1a RP11-309I14 chr16 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081975 SP6,
AZ081976 T7
  RH54824
16p11.2e RP11-360L15 chr16 28Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254685 T7+,
AZ254686 SP6+
  RH76376
16p11.1b RP11-80F22 chr16 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284035 SP6,
AQ284038 T7
AC018558 stSG48481
16q11.2~12.1 RP11-474B12 chr16 45Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081926 T7+,
AZ081905 SP6
AC007533 AFMa222za9,
RH68894
16q12.1b RP11-303G21 chr16 46Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081885 SP6+,
AZ081886 T7
  RH12071,
RH54687
16q12.1b~12.1c RP11-462M23 chr16 47Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AF203708,
AQ585414 T7,
CL423294 T7,
CL423290 SP6,
AF203709
  RH15621
16q12.1d RP11-321D3 chr16 48Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081944 T7,
AZ081932 SP6
  H61744
16q12.2a~12.2b RP11-297L17 chr16 51Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081864 SP6+,
AZ081867 T7,
AQ505120 T7
AC026462 RH54639
16q12.2b RP11-566E2 chr16 52Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081958 SP6+,
AZ081963 T7+
  stSG31698
16q12.2b~12.2c RP11-497D8 chr16 53Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081973 SP6,
AZ081974 T7
  RH69783
16q13b~13c RP11-406F21 chr16 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081979 SP6,
AZ081983 T7
AC009089 RH17827,
RH26356
16q13c~13d RP11-502P10 chr16 55Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081896 SP6+,
AZ081870 T7+
  -,
RH67976,
SHGC-61194
16q21b RP11-468F3 chr16 60Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081900 SP6+,
AZ081872 T7,
AQ632390 SP6
  RH54555+,
WI-22193+
16q21c RP11-363M24 chr16 60Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081984 T7,
AZ081986 SP6
  WI-15820
16q21d RP11-492O11   AZ081895 SP6+,
AZ081935 T7+
  RH41925+
16q21e~22.1a RP11-454B14 chr16 65Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AF188093+,
AF188092+,
AQ585043 SP6+,
CL423258 SP6,
CL423262 T7
  A001Z40,
RH10631,
RH54662
16q22.1a~22.1b RP11-553M22 chr16 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081907 T7+,
AZ081902 SP6
  A004M31,
A006S35
16q22.1b~22.1c RP11-495A4 chr16 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081898 SP6+,
AZ081933 T7
  A006S35
16q22.1d RP11-462K4 chr16 67Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081897 SP6+,
AZ081873 T7
  A005R23,
RH16908
16q22.2a RP11-520B6 chr16 69Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081924 T7+,
AZ081903 SP6
  stSG39581
16q22.2b RP11-564F10 chr16 71Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081961 T7+,
AZ081969 SP6+
  RH65127
16q23.1c RP11-495H21 chr16 76Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081892 SP6+,
AZ081937 T7
  RH70446
16q23.3a RP11-488H5 chr16 80Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081959 T7+,
AZ081960 SP6+
  RH11469
16q23.3b RP11-457K7 chr16 82Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081893 SP6+,
AZ081874 T7,
AQ586283 T7
  RH17445
16q24.1a RP11-442O1 chr16 83Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ254687 T7+,
AZ254688 SP6+
AC026469 RH54531
16q24.1b~24.1c RP11-309G16 chr16 84Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081988 T7,
AZ081985 SP6
  RH74952
16q24.1b~24.1c RP11-443M9 chr16 84Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081890 SP6+,
AZ081877 T7
  M91196+,
M91196
16q24.2b~24.3a RP11-133L7 chr16 88Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ385582 T7,
AQ350275 SP6
  

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.