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Cancer Genome Characterization Initiative

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CCAP BAC Clones

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Chromosome 14


Chromosome 14
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
14q11.1b RP11-324B11 chr14 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081795 T7+,
AZ081805 SP6,
AQ539031 SP6
  RH53565,
WI-18729
14q11.2b RP11-332N6 chr14 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081796 T7+,
AZ081799 SP6
  RH53565
14q11.2c RP11-566I2 chr14 21Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081794 T7+,
AZ081804 SP6
  WI-14198
14q11.2g~12a RP11-368G9 chr14 23Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081917 T7+,
AQ542979 T7,
AZ575482 T7,
AZ081803 SP6,
AQ542975 SP6
  stSG41912
14q12a~12b RP11-303G24 chr14 25Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081787 T7+,
AZ081801 SP6
  RH53533
14q12c RP11-529E4 chr14 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081792 T7+,
AZ081800 SP6
  RH71202
14q12d RP11-369O9 chr14 29Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081947 SP6,
AZ081946 T7
  RH47598
14q12e RP11-559L22 chr14 30Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081813 SP6+,
AZ081791 T7+,
AZ564736 SP6
  A002A15+,
A002A15
14q12e~13.1a RP11-557O15 chr14 32Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081978 T7,
AZ081977 SP6
  A003N09
14q13.2b RP11-465B6 chr14 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081818 SP6+,
AZ081788 T7+,
AZ564739 SP6,
AQ581027 SP6,
AQ581028 T7
AL354770 RH28319
14q13.2b~13.3a RP11-458A21 chr14 36Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081912 SP6+,
AZ081920 T7+,
AQ582366 T7
  RH69670
14q13.3a RP11-26M6 chr14 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B84609 SP6,
B84610 T7
  SHGC-2833
14q21.1b RP11-305B23 chr14 38Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081823 SP6+,
AZ564740 SP6,
AZ081798 T7
  A003B13
14q21.1c~21.2a RP11-435L2 chr14 42Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081817 SP6+,
AZ081810 T7,
AZ564742 SP6
  RH26197
14q21.2a~21.3a RP11-453F20 chr14 44Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081812 SP6+,
AZ303305 T7,
AZ564741 SP6,
AQ587286 SP6
  A009Y19,
RH67673
14q21.3c~21.3d RP11-315M16 chr14 47Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081816 SP6+,
AZ564743 SP6,
AQ504627 SP6,
AZ081811 T7,
AZ520619 T7
  RH53701
14q21.3d RP11-321F3 chr14 46Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081784 SP6,
AZ081781 T7
  RH44884
14q22.1b RP11-379K10 chr14 50Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081921 SP6+,
AZ081809 T7,
AQ531520 T7,
AQ531159 SP6
  RH65693
14q22.1c RP11-368A1 chr14 50Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081906 T7,
AQ542780 T7,
AZ081911 SP6
  RH26628
14q22.2b RP11-312M17 chr14 54Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081815 SP6+,
AZ564744 SP6,
AZ081808 T7
  A002Q45
14q22.3b RP11-571D4 chr14 55Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081913 SP6+,
AZ081807 T7
  N38942
14q23.1a RP11-571J17 chr14 57Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081814 SP6+,
AZ564745 SP6,
AZ081806 T7
  A005D15
14q23.1b~23.1c RP11-471N20 chr14 60Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081851 T7,
AQ632875 T7,
AZ081862 SP6
  stSG21195
14q23.1c RP11-436G5 chr14 61Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ554747 T7+,
AZ081955 SP6,
AZ081954 T7
  A005M45,
RH16813
14q23.1c~23.2a RP11-445J13 chr14 62Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081834 SP6,
AZ081833 T7
  SGC31030
14q23.3a RP11-305I24 chr14 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081828 SP6,
AZ081827 T7
  RH46030
14q24.2a RP11-448I10 chr14 69Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081930 SP6,
AZ081925 T7
  A009C06,
RH67094
14q24.2a~24.2b RP11-325N20 chr14 71Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081938 SP6,
AZ081953 T7
  RH70438
14q24.2b RP11-435K23 chr14 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081857 SP6,
AQ936166 SP6,
AQ936412 T7,
AZ081858 T7
  RH48398
14q24.3c CTD-3211F8 chr14 74Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ174807 T7,
AQ174955 SP6
AC007956 
14q24.3d RP11-501I4 chr14 76Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081831 T7+,
AZ081849 SP6+
AF111168 RH53682
14q24.3d RP11-98L12 chr14 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ320418 T7,
AQ320414 SP6
AC008015 
14q31.1b RP11-475O3 chr14 79Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081855 SP6,
AQ635862 T7,
AZ081863 T7
  RH78382
14q31.1c RP11-477M24 chr14 80Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ635783 T7+,
AQ635769 SP6,
AZ081845 T7,
AZ081844 SP6
  RH44680
14q31.2a RP11-259M24 chr14 83Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ481968 SP6,
AQ481970 T7
  
14q31.3c RP11-477I23 chr14 86Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081914 T7+,
AZ081918 SP6+,
AQ634805 SP6
  RH78126
14q31.3d RP11-327L24 chr14 87Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081943 T7,
AZ081942 SP6
  RH69803
14q32.12a~32.12b RP11-374H13 chr14 92Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081829 T7,
AZ081836 SP6
  Cda0vd04
14q32.13b~32.2a RP11-300N18 chr14 93Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ504718 SP6,
AZ081941 SP6,
AZ081980 T7,
AQ504720 T7
  RH17576
14q32.2a RP11-483K13 chr14 95Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081904 T7,
AQ637174 T7,
AQ637172 SP6,
AZ303373 SP6
  A001Y25,
RH10590
14q32.2b RP11-431B1 chr14 98Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081948 T7,
AZ081949 SP6
  stSG35230
14q32.32a RP11-502A24 chr14 101Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081840 SP6+,
AZ081841 T7+
  -,
A008V18,
RH48398+
14q32.32b RP11-454M12 chr14 102Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081842 SP6+,
AZ081843 T7,
AQ582808 T7
  T86307
14q32.33d RP11-435F10 chr14 104Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ081951 SP6,
AZ081950 T7
  RH53818

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.