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Cancer Genome Characterization Initiative

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CCAP BAC Clones

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Chromosome 13


Chromosome 13
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
13q12.12a RP11-520L19 chr13 23Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423260 SP6,
CL423264 T7
AL157368 
13q12.13c RP11-144H23 chr13 26Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423297 T7,
AQ389551 T7,
CL423291 SP6
AL158062 SHGC-6462
13q12.3c RP11-121O19 chr13 29Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ343487 SP6,
AQ343491 T7
AL138681 SHGC-11972,
SHGC-2180
13q12.3d~13.1a RP11-367C11 chr13 30Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ547931 T7,
CL423329 T7,
CL423324 SP6
AL138965 
13q13.2a RP11-87G1 chr13 32Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284066 T7 AL139383 
13q13.3a RP11-98D3 chr13 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ320551 T7+,
AQ320547 SP6
AL390071 
13q13.3b RP11-560N15 chr13 35Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL390029 
13q13.3c RP11-14O22 chr13 36Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B76332 T7 AL136220 
13q13.3e RP11-429E17 chr13 38Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ550295 SP6,
AQ550297 T7
AL158194 
13q14.11a RP11-89L15 chr13 39Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284837 SP6,
AQ284840 T7
AL133318 D13S1162
13q14.11d RP11-21H9 chr13 41Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B83994 T7,
B83993 SP6
AC023297 SHGC-4151
13q14.11e RP11-484D5 chr13 43Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ630687 SP6,
AQ630689 T7
AL356107 
13q14.12b~14.13b RP11-417C20 chr13 46Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ553703 T7 AL138704 
13q14.2a RP11-278A16 chr13 48Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ506199 T7,
AQ506198 SP6
AL139182 
13q14.3c RP11-48H1 chr13 49Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ199561,
CL423295 SP6,
CL423296 T7,
AQ199580
AL158195 
13q21.1c RP11-100C24 chr13 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ322007 SP6,
AQ322009 T7
AL353657 
13q21.1d RP11-14O16 chr13 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B82359 SP6,
B87995 T7,
B76327 T7
AC018395 
13q21.2a RP11-16M6 chr13 58Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75508 SP6,
B75509 T7
AC024276 
13q21.2b RP11-430I3 chr13 59Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ916637 T7,
AQ552415 T7,
AQ552413 SP6,
AZ916638 SP6
AL356502 RH44715
13q21.31b~21.31c RP11-282D7 chr13 62Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ519615 SP6,
AQ505208 T7
AL355609 
13q21.32b RP11-326B4 chr13 66Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423271 T7,
CL423266 SP6,
AQ544235 SP6
AL139325 
13q21.33a~21.33b RP11-23B16 chr13 67Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ013276,
CL423303 T7,
CL423298 SP6,
AQ013279
AL161894 
13q21.33c~21.33d RP11-394C23 chr13 69Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL162378 
13q22.1a RP11-165L1 chr13 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ415440 SP6,
AQ382553 T7
AL139181 SHGC-665,
SHGC-8155
13q22.1b RP11-285E18 chr13 73Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423194 SP6,
CL423199 T7
AL157814 
13q22.2a~22.2b RP11-29G8 chr13 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85013 SP6,
B85014 T7
AL137782 
13q31.1a RP11-454P4 chr13 80Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ586037 SP6,
AQ586040 T7
AL157696 
13q31.1b RP11-142F6 chr13 81Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ387338 T7 AL353628 
13q31.1c RP11-120L14 chr13 83Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ341738 SP6,
AQ341740 T7
AL162493 SHGC-20831
13q31.1d RP11-29C8 chr13 85Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B84980 SP6,
B84981 T7
AL161428 
13q31.2a RP11-315A9 chr13 87Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423336 T7,
CL423331 SP6
AL162498 
13q31.3a RP11-75E6 chr13 89Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ267195 T7,
AQ267191 SP6
AL139185 
13q31.3b RP11-165N12 chr13 91Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ418312 SP6,
AQ418313 T7
AL159152 SHGC-37261
13q31.3c RP11-632L2 chr13 92Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ493472 SP6,
AQ441472 T7
AL354811 
13q32.1c RP11-195A5 chr13 96Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ422258 SP6,
AQ422262 T7
AL160393 
13q32.2b~32.3a RP11-318G11 chr13 98Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ535735 SP6+,
AQ535737 T7
AL139084 
13q32.3c RP11-151A6 chr13 99Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ377444 SP6+,
AQ377445 T7
AL136526 
13q33.1c RP11-46I10 chr13 101Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ201102,
CL423228 SP6,
CL423229 T7,
AQ201104
AL159155 
13q33.2a~33.2b RP11-713K6 chr13 105Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ437662 SP6,
CL423259 SP6,
CL423263 T7
AC021993 
13q33.3b RP11-94F16 chr13 107Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ323593 SP6,
AQ323595 T7
AL139189 
13q34b RP11-90L1 chr13 109Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ284465 SP6,
AZ518557 T7,
AQ284477 T7
AL139385 
13q34c RP11-480K16 chr13 112Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL160033 
13q34d RP11-98F14 chr13 112Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ319420 T7,
AQ319417 SP6
AL137002 H28922

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.