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CCAP BAC Clones

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Chromosome 11


Chromosome 11
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
11p15.5b~15.5c RP11-371C18 chr11 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ532043 SP6 AC074189,
AC091196
 
11p15.4d~15.5a RP11-120E20 chr11 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ349931 T7,
AQ349928 SP6
AC060812,
AC136364
SHGC-20653
11p15.4c RP11-438N5 chr11 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC018888,
AC087441
 
11p15.4b RP11-645I8 chr11 6Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ400689 SP6+,
AQ402154 T7
AC021935 AFM248XF9,
SHGC-2070
11p15.3c RP11-206L19 chr11 11Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC019317 SHGC-2092
11p15.2c RP11-98J9 chr11 13Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ318159 SP6,
AQ318162 T7
AC027779 AFM323VC1,
D11S1348
11p15.2a RP11-13J19 chr11 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B83397 SP6,
B76101 T7
AC013635 
11p15.1e RP11-27L6 chr11 18Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B84717 SP6,
B84718 T7
AC025620 
11p15.1c RP11-2C23 chr11 19Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC015684 SHGC-33456,
SHGC-5325,
SHGC-972
11p14.3c RP11-265F24 chr11 21Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ487106 SP6,
AQ487109 T7
AC021114,
AC116534
 
11p14.3b RP11-20J1 chr11 25Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ008164 SP6,
B88783 SP6,
B83841 T7
AC013799,
AC018863
 
11p14.2a RP11-1L12 chr11 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B63555 SP6,
B48419 SP6,
B63238 T7
AC015756 SHGC-17501
11p14.1b RP11-685B11 chr11 30Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ432626 SP6+ AC020695 
11p13b RP11-30D23 chr11 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B87733 T7,
B87732 SP6
AC009637 
11p12d RP11-72A10 chr11 36Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ267094 SP6,
AQ267096 T7
AC079073 SHGC-20671
11p12b RP11-541L6 chr11 39Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423307 T7,
CL423302 SP6
AC087444+,
AC024244
 
11p12a RP11-484D2 chr11 43Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ631765 T7,
AQ631763 SP6
AC025552,
AC087276
 
11p11.2d RP11-12C11 chr11 44Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423242 SP6,
B75719 SP6,
CL423244 T7
AC091011+,
AC023340
AFMA131XD5+,
AFMA131XD5+,
AFMA131XD5,
SHGC-33775
11p11.2a RP11-722K13 chr11 47Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ462216 T7+,
AQ513509 SP6
AC067943,
AC087629
 
11q11b~11c RP11-100N3 chr11 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ344866 SP6,
AQ323218 T7
AC090924,
AP001803
AFM344ZG1,
SHGC-2100
11q12.1d RP11-21B14 chr11 59Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85788 T7,
B85787 SP6
AC013807 
11q12.2a RP11-467L20 chr11 61Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ631090 T7,
AQ631089 SP6
AC090925+,
AP002380
 
11q12.3b RP11-660B16 chr11 62Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ611477 T7,
AQ611528 SP6
AC073228 AFM039XG3
11q13.1b RP11-727K3 chr11 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ456982 T7+,
AQ455842 SP6
AC091141,
AP001092
 
11q13.2a~13.2b RP11-20K4 chr11 63Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationSTS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423276 SP6+,
CL423278 T7*,
B83851 T7*
AC021987* SHGC-14407+,
SHGC-34148*,
SHGC-9670
11q13.2a~13.2b RP11-20K4 chr11 67Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423276 SP6+,
CL423278 T7,
B83851 T7
AC021987 SHGC-14407+,
SHGC-34148,
SHGC-9670*
11q13.2c RP11-569N5 chr11 68Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423311 T7 AC026872 
11q13.3b RP11-203N8 chr11 69Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ413618 T7,
AQ413617 SP6
AP001787 
11q13.4a~13.4b RP11-44J5 chr11 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ199008,
AQ199009
AC011077 AFMC020YD5
11q13.4b RP11-707G14 chr11 73Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AP002770 
11q13.4c RP11-15C6 chr11 74Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B82387 SP6,
B82388 T7,
B75289 T7
AC011686 
11q13.5b RP11-111M22 chr11 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ351458 T7,
AQ322945 SP6
AP002360 
11q14.1a RP11-7H7 chr11 78Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B71312 SP6,
AZ520008 T7
AP002412 SHGC-12273
11q14.1b RP11-266G4 chr11 79Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ489999 SP6,
AQ490001 T7
AP001926 
11q14.1c RP11-1E8 chr11 81Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B47679 T7,
AQ312928 SP6
AC021245 D11S901,
SHGC-219
11q14.1d RP11-118L16 chr11 83Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ349776 SP6,
AQ349778 T7
AC018708 SHGC-8474
11q14.1e RP11-131C11 chr11 84Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC011768 SHGC-36010
11q14.3d RP11-372E19 chr11 91Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ550157 SP6,
AQ528055 T7
AC025820,
AP003056
 
11q21c RP11-685N10 chr11 93Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423339 SP6,
CL423342 T7
AP000786 SHGC-35949
11q21c~21d RP11-16K5 chr11 95Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75493 T7,
B75492 SP6
AC011875 AFM203VG7+,
AFM203VG7,
SHGC-13733
11q22.1c RP11-775E2 chr11 99Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ520311 T7,
AQ514816 SP6
AP001376 
11q22.1d RP11-236L10 chr11 100Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ480489 SP6,
AQ480491 T7
AP001827 
11q22.2a RP11-750P5 chr11 102Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423209 T7+,
CL423205 SP6
AP000922 SHGC-11954
11q22.3a RP11-179B7 chr11 103Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ418262 SP6,
AQ418264 T7
AC024030,
AP003083
SHGC-17520+
11q22.3b RP11-648J7 chr11 105Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ611884 T7,
AQ465252 SP6
AP001985 
11q22.3c RP11-56J3 chr11 107Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ115883,
AQ081877
AC015692 SHGC-9652
11q23.1b RP11-76P21 chr11 110Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ281815 SP6,
AQ281816 T7
AP002448 
11q23.1c RP11-3F7 chr11 111Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B63364 T7,
B63363 SP6
AC010815 AFM320XH1+,
SHGC-2090
11q23.2b RP11-799K20 chr11 113Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423237 SP6 AC020742 
11q23.2c~23.3a RP11-356E17 chr11 115Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ535047 T7,
AQ535046 SP6
AP001891 
11q23.3d RP11-770J1 chr11 117Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AP001267 
11q23.3g RP11-8K10 chr11 119Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72374 SP6,
B72375 T7
AC016849 SHGC-13646
11q24.1a~24.1b RP11-344F5 chr11 121Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ541870 T7+,
AQ541868 SP6,
AZ521393 SP6,
AZ521394 T7
AP001982 
11q24.1b~24.1c RP11-11C15 chr11 122Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B73074 SP6,
B73075 T7
AC021981 SHGC-12982
11q24.2a~24.2b RP11-10N17 chr11 124Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72994 SP6,
B72995 T7
AC013614 
11q24.3a RP11-254C5 chr11 127Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ478282 T7,
AQ478281 SP6
AP001829 AFM324ZH9,
SHGC-2094
11q24.3c RP11-354O3 chr11 130Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ518009 T7,
AQ531254 SP6
AP001890 
11q25a RP11-77C9 chr11 131Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ268065 T7,
AQ268063 SP6
AP001811 SHGC-248
11q25b RP11-15J5 chr11 131Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75352 T7,
B75351 SP6
AC012234 SHGC-4808
11q25d RP11-469N6 chr11 133Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ630410 T7,
AQ630407 SP6
AP001999 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.