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CCAP BAC Clones

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Chromosome 10


Chromosome 10
Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
10p15.3d~15.3c RP11-10D13 chr10 0Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72753 T7,
B72752 SP6
AL589988 SHGC-1079
10p15.3b RP11-89B19 chr10 1Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ283662 T7,
AQ283660 SP6
AL773579 
10p15.2a RP11-23O12 chr10 3Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationno insert sequence and no STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ014403,
AQ014400
AC025102+ AA013481,
SHGC-11812
10p15.2a~15.1e RP11-433J20 chr10 4Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ582824 T7,
AQ582823 SP6
AC025822 
10p15.1d RP11-5N23 chr10 6Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B49311 SP6,
B49312 T7
AC010956,
AL158043
SHGC-37357
10p14b RP11-796C22 chr10 12Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ500042 SP6,
AQ710218 T7
AC027507,
AL645617
 
10p13b RP11-149I8 chr10 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL139338 
10p13a RP11-657A9 chr10 15Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ512180 SP6,
AQ497823 T7
AL358033 
10p12.33b RP11-16O1 chr10 17Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B75515 SP6 AL139238 AA485996
10p12.2a RP11-215I17 chr10 23Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423277 SP6,
CL423279 T7
AL356418 
10p12.1c RP11-80K21 chr10 25Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AZ520758 T7,
AQ281287 T7,
AQ281285 SP6
AL139821 
10p12.1a RP11-151P2 chr10 27Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ379708 T7,
AQ379707 SP6
AL354859 
10p11.22c RP11-125C10 chr10 31Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ347621 T7,
AQ347619 SP6
AL359546 
10p11.22b RP11-195O1 chr10 32Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ413399 T7,
AQ413396 SP6
AL354750 
10p11.21c RP11-174P15 chr10 34Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423312 T7,
CL423309 SP6
AL356462 
10q11.21c RP11-20J15 chr10 44Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B85686 T7,
AQ008073 SP6
AL137026 AA447115,
SHGC-2055
10q11.21d RP11-172C24 chr10 45Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423343 T7,
CL423340 SP6,
AQ413578 SP6
AL512595 stSG46659
10q21.1a RP11-95G14 chr10 53Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ314200 T7,
AQ314198 SP6
AC026228 SHGC-6416
10q21.1c RP11-183F21 chr10 55Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ418852 SP6,
AQ418854 T7
AC027671 stSG72239
10q21.1d RP11-264A11 chr10 56Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC051618 stSG72356
10q21.1f RP11-55C5 chr10 60Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ081593 AL355474 
10q21.2a RP11-561F6 chr10 58Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC069026 AFM336XD1
10q21.2b RP11-25P7 chr10 64Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B82159 T7,
AQ013494,
AQ013496
AC016212 SHGC-32854
10q21.3d RP11-93L14 chr10 68Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ312697 SP6,
AQ312699 T7
AC022029 stSG46416
10q21.3e RP11-135E4 chr10 70Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ345266 SP6,
AQ380041 T7
AL590067 SHGC-52582
10q22.1c RP11-367H5 chr10 71Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ529730 T7 AL731540 
10q22.1e RP11-58O1 chr10 72Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ201623,
AQ201626
AL359384 SHGC-3186
10q22.2a RP11-390A15 chr10 75Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information CL423210 T7,
CL423206 SP6
AL713896 
10q22.2c RP11-7C23 chr10 76Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B71981 T7,
B71980 SP6
AC010912 
10q22.3a RP11-45P20 chr10 78Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ202348,
AQ202344
AC012111 SHGC-20613
10q22.3b RP11-428P16 chr10 78Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ549562 T7+ AL731556 RH41997
10q22.3f RP11-31L4 chr10 80Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ082309,
CL423238 SP6,
CL423241 T7,
AQ046665
AC078775 SHGC-11186
10q23.1b~23.1c RP11-185K11 chr10 84Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ417792 SP6,
AQ417793 T7
AL136085 
10q23.31d RP11-10L13 chr10 92Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72941 T7,
B72940 SP6
AC011170 AFM022TE3+,
SHGC-14535,
SHGC-3514
10q23.33a RP11-366I13 chr10 94Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL356128 
10q23.33d RP11-119K6 chr10 96Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ350520 T7,
AQ350517 SP6
AL138759 
10q24.1b RP11-35J23 chr10 98Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ045830,
AQ045828
AL136181 SHGC-9747
10q24.2c RP11-483F11 chr10 101Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ629297 SP6,
BH367228 SP6,
AQ629299 T7,
BH141086 T7
AL133353 RH26697
10q24.32a RP11-107I14 chr10 102Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AL133387 
10q25.1a RP11-16H23 chr10 105Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B83625 T7+ AL138761 SHGC-31986
10q25.1b RP11-41D21 chr10 108Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ029197 T7+,
AZ518130 SP6
AL359847 SHGC-31312
10q25.1c RP11-1K24 chr10 109Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ315654 SP6+,
B48413 T7
AC013757 
10q25.1e RP11-469M11 chr10 110Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ629083 SP6 AL138766 
10q25.2a RP11-73H14 chr10 112Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequenceBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ267617 SP6,
AQ238080 T7
AL359260 
10q25.3a RP11-317F20 chr10 116Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ535184 T7,
AQ535181 SP6
AL133384 RH10090
10q25.3b RP11-96N16 chr10 117Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ315861 T7,
AQ315858 SP6
AC073588 AI049675
10q26.12b RP11-257O17 chr10 122Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information  AC023282 SHGC-10206,
SHGC-841
10q26.13a RP11-7P17 chr10 123Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information B72273 SP6,
AZ520154 T7
AC009989 SHGC-9871
10q26.13d RP11-45O7 chr10 126Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ200221,
CL423275 T7,
CL423270 SP6,
AQ200219
AL391708 D10S1656
10q26.2c RP11-31A20 chr10 129Mb insert sequence has clone end informationBAC-end sequence aligned in the plus orientationinsert sequence and STS alignedBAC-end sequence aligned in the minus orientationinsert sequence has clone end information AQ044897 AL157393 SHGC-938

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation BAC-end sequence aligned in the minus orientation
   no insert sequence and no STS aligned no insert sequence and no STS aligned
   STS aligned STS aligned
   insert sequence insert sequence
   insert sequence and STS aligned insert sequence and STS aligned
   insert sequence has clone end information insert sequence has clone end information.