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  • CGAP Info
  • CGAP Data

CGAP HOW TO

CHROMOSOMES - how do you?

    Find:
Chromosome breakpoints in cancerHuman
Recurrent aberrations in cancerHuman
Distribution of SNPs by chromosome, filtered by tissueHuman
Location of confirmed SNPs derived from linkage mapping, filtered by tissueHuman
Genes by cytogenetic locationHuman or Mouse
SNPs by cytogenetic locationHuman
SNPs by physical locationHuman
Cytogenetic locations of FISH-mapped BACsHuman

CLONES - how do you?

    Find:
A list of sequence-verified cDNA clones
(by Research Genetics)
Human and Mouse
Clones for a specific UniGene clusterHuman or Mouse

    Purchase:
CGAP clonesHuman or Mouse
FISH-mapped BAC clones (CCAP)Human

GENES - how do you?

    Compare:
Gene expression across tissues (cDNA libraries)Human or Mouse
Gene expression across tissues (SAGE libraries)Human
Significant gene expression differences across tissues (cDNA libraries)Human or Mouse
Significant gene expression differences across tissues (SAGE libraries)Human
    Find genes by:
GenBank accession number Human or Mouse
UniGene cluster number Human or Mouse
Cytogenetic locationHuman or Mouse
Nucleotide sequenceHuman or Mouse
Symbol Human or Mouse
TissueHuman or Mouse
Keyword in name Human or Mouse
    Find:
Genes unique to library setHuman or Mouse
Genes in SAGE libraries, grouped by expression levelHuman
SNPs in genes, by GenBank accession numberHuman or Mouse
SNPs in genes, by UniGene cluster numberHuman or Mouse
    View:
Genes by Gene Ontology classification Human or Mouse
View UniGene cluster assembliesHuman or Mouse

TISSUES and LIBRARIES - how do you?

    Browse:
Libraries (CGAP, MGC, EST, ORESTES)Human or Mouse
    Compare:
Gene expression across tissues (cDNA libraries)Human or Mouse
Gene expression across tissues (SAGE libraries)Human
Significant gene expression differences across tissues (cDNA libraries)Human or Mouse
Significant gene expression differences across tissues (SAGE libraries)Human
    List:
All CGAP librariesHuman and Mouse
Unique and non-unique genes by library Human or Mouse
    Purchase:
CGAP librariesHuman or Mouse
    Read about:
Laser-capture microdissection (LCM)Human or Mouse
    View:
Library production protocolsHuman or Mouse
SAGE Genie librariesHuman

SNPs (GAI) - how do you?

    Download:
SNP genotypes in CRIMAP ".gen" formatHuman
        and associated ".loc files"Human
    Find:
Primer pairs for SNPsHuman
SNPs in genes, by GenBank accession numberHuman or Mouse
SNPs in genes, by UniGene cluster numberHuman or Mouse
Sequenced-verified SNPs in genes important to cancerHuman
SNPs on genetic and physical mapsHuman
SNPs by sequence searchHuman or Mouse
SNPs by tissueHuman
    Map:
SNPs onto mRNA sequencesHuman
    Search for:
SNPs in data you provide (account required)Human
    View:
SNPs in STS formatHuman
A flat file of candidate SNPsHuman
A flat file of validated SNPsHuman
A list of confirmed SNPs in genesHuman
A list of named genes containing SNPsHuman or Mouse